Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0429
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62420.1 68414.m07042 expressed protein contains Pfam profile...    31   0.89 
At4g01915.3 68417.m00254 expressed protein                             29   2.1  
At4g01915.2 68417.m00253 expressed protein                             29   3.6  
At4g01915.1 68417.m00252 expressed protein                             29   3.6  
At2g22840.1 68415.m02712 expressed protein identical to transcri...    29   3.6  
At1g60410.1 68414.m06801 F-box family protein contains F-box dom...    29   3.6  
At3g63330.1 68416.m07125 protein kinase family protein contains ...    27   8.3  
At3g60700.1 68416.m06791 expressed protein                             27   8.3  
At1g36745.1 68414.m04571 hypothetical protein                          27   8.3  
At1g16930.1 68414.m02053 F-box family protein contains F-box dom...    27   8.3  

>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 465

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 424 FFCHVYCCFSHYYLCW*TTARKRFIH 347
           F C  + C++ Y++ W T+ R++ IH
Sbjct: 353 FLCDCFSCYTSYWVRWDTSPRRQLIH 378


>At4g01915.3 68417.m00254 expressed protein
          Length = 106

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 199 RGSTDGHSIFTHVLKSLSEKQGLFANTI-LSTNTSRRKSPSSCLAIFNYGNGKNRILYLY 23
           RGS+   S  THVL SL  K  LF + + + T+ SR     SCLA F       +  +L+
Sbjct: 16  RGSSSRWSPLTHVLISLFTKTELFKSVLFIQTSGSR-----SCLAYFTV-----QFFHLW 65

Query: 22  YFV 14
           Y++
Sbjct: 66  YYI 68


>At4g01915.2 68417.m00253 expressed protein
          Length = 73

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 199 RGSTDGHSIFTHVLKSLSEKQGLFANTI-LSTNTSRRKSPSSCLAIF 62
           RGS+   S  THVL SL  K  LF + + + T+ SR     SCLA F
Sbjct: 16  RGSSSRWSPLTHVLISLFTKTELFKSVLFIQTSGSR-----SCLAYF 57


>At4g01915.1 68417.m00252 expressed protein
          Length = 73

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 199 RGSTDGHSIFTHVLKSLSEKQGLFANTI-LSTNTSRRKSPSSCLAIF 62
           RGS+   S  THVL SL  K  LF + + + T+ SR     SCLA F
Sbjct: 16  RGSSSRWSPLTHVLISLFTKTELFKSVLFIQTSGSR-----SCLAYF 57


>At2g22840.1 68415.m02712 expressed protein identical to
           transcription activator GRL1 [Arabidopsis thaliana]
           GI:21539880 (unpublished); supporting cDNA
           gi|21539879|gb|AY102634.1|
          Length = 530

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 214 SSHISRGSTDGHSIFTHVLKSLSEKQGLFANTILSTNTSRRKSPSSCLAIFNYGNGKNRI 35
           SS +SR STDG S      K+LS  QG+    + ST  +  +     +  F+  +GK+ +
Sbjct: 42  SSKLSRTSTDGFSSSPASAKTLSFHQGI--PLLRSTTINDPRKGQEHMLSFSSASGKSDV 99

Query: 34  L-YLYY 20
             YL Y
Sbjct: 100 SPYLQY 105


>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 168 VNIECPSVEPLEICDDDPGACVVKSGGPFLKHSI 269
           V I+ PS+E + ICD  P +  +   GPF + ++
Sbjct: 229 VEIDSPSLEFMSICDKKPESLKIHRIGPFAEVTV 262


>At3g63330.1 68416.m07125 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 376

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 227 LRC*KWWTFFKTFNSGK 277
           LR  KWWT+ KT  SGK
Sbjct: 108 LRPSKWWTWLKTTESGK 124


>At3g60700.1 68416.m06791 expressed protein
          Length = 219

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 412 VYCCFSHYYLCW*TTARKRFIHCYFYRK 329
           ++CCFS   + W T    +F   YF  K
Sbjct: 29  IFCCFSQLLVVWVTLCAVKFSCSYFLSK 56


>At1g36745.1 68414.m04571 hypothetical protein
          Length = 110

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 523 AGEIIMFLRISCFGKLIITRFQGAGPPNLSSA 618
           AG ++M+LR+  FG+ I  R+      +L SA
Sbjct: 64  AGVVLMYLRVKHFGRFIAVRWLAEKAMDLESA 95


>At1g16930.1 68414.m02053 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 449

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 168 VNIECPSVEPLEICDDDPGACVVKSGGPFLKHSI 269
           V I+ P +E + +CD    + ++ + GPF K  I
Sbjct: 230 VTIDAPRLEYMNLCDHRSDSFIIHNIGPFAKVDI 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,840
Number of Sequences: 28952
Number of extensions: 322045
Number of successful extensions: 879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)