Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0428
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9743| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.27 
SB_57739| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    29   4.4  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_7455| Best HMM Match : HC2 (HMM E-Value=8.7)                        28   7.7  

>SB_9743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 470 NXRHPADTGRWRAQGQASPGIFNSRGAADGSDISSRRFID 589
           N +  AD G +  +G+A  G+FN +G AD    +++R  D
Sbjct: 70  NNKGVADKGLFNNKGEADKGLFNDKGEADKGLFNNKRVAD 109


>SB_57739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
 Frame = +3

Query: 303 YIEDENVEFPTCCARLRCVVEVNGERI----VQTRGQPGELFPDKPWKGQQNEPNPAVV- 467
           Y+ D       C  R+RC+   N  R     V TR + G       +  +  +  PA+V 
Sbjct: 280 YVGDIKQNRMKCLVRVRCIHSANQHRASHVTVFTRQRVGNGLLQAVYNHEYEKCVPAIVL 339

Query: 468 -GXSGIQQTPVGGEPRVRRLLEYLTAEEQ 551
                ++Q  V  +PR RRLL+    +EQ
Sbjct: 340 APVFAVEQGKVPVKPRGRRLLKKKDMDEQ 368


>SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 252 CGCRKPKIPENALECHEYIEDENVEFPTCCARLRC 356
           C  +KP +P++    HE +    +    C  R RC
Sbjct: 28  CLAQKPGVPQDTRHSHEPLPQRKISLIVCSTRTRC 62


>SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 119 SADRAGKTRQHNINNAPNCFPCCIL 45
           SA+   K R H+  N  +CF CCIL
Sbjct: 279 SANDKKKKRLHDSANQKSCFTCCIL 303


>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 270 KIPENALECHEYIEDENVEFPT 335
           ++ E+ LEC EYI ++N EF T
Sbjct: 513 EMSESILECFEYIPEKNTEFMT 534


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 225 QRREILHSCCGCRKPKIPENALECHEYIEDENVEFPTCC 341
           QRRE   +  G    K  E     H+   D NV F  CC
Sbjct: 731 QRREGFKTAEGSEARKQDERRFRLHQSSSDSNVYFSQCC 769


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 399 QPGELF-PDKPWKGQQNEPNPAVVGXSGIQQ 488
           QP ELF P+ P K QQN+P P       ++Q
Sbjct: 121 QPVELFAPNSPPKPQQNQPKPPKPSNKTVKQ 151


>SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 485 ADTGRWRAQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQGQPPTKSASTVY 646
           ++T + R++    P   N+R AA    + +RR     +    G PP ++   VY
Sbjct: 264 SNTSKQRSKSHPPPSRNNTRTAAKSRRLFARRSKSASSDNTSGDPPKRAVLAVY 317


>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1593

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 214 RCEIRDGKYFIAAVDVENQKYRKTHWNATNTSK 312
           +C I  G+Y+I     + Q++R   WNA +T++
Sbjct: 497 QCNIIHGRYYIFHHKKDVQRHRYLVWNANDTTR 529


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +2

Query: 482  PADTGRWRAQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQGQPPTK 628
            PA  GR R +G+   G     G     D S  R    P P+    PP +
Sbjct: 1133 PAIRGRGRGKGRGEVGSKQRGGLGRSGDKSPVRMEQEPPPRSAASPPAR 1181


>SB_7455| Best HMM Match : HC2 (HMM E-Value=8.7)
          Length = 153

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 440 TKRAKSCCCRNXRHPADTGRWRAQGQASPGIFNSRGAADGSDISSRRFID 589
           TKR       N +  AD G +  +  A  G+FN++  AD    +++R  D
Sbjct: 6   TKRGADKGLFNNKRVADKGLFNNKRVADKGLFNNKRVADKGLFNNKRVAD 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,724,217
Number of Sequences: 59808
Number of extensions: 507394
Number of successful extensions: 1509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)