Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0427
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 33 0.23
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 30 1.2
08_02_0602 + 19183549-19184919 29 2.1
07_01_0310 + 2209084-2209554 29 2.1
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 29 2.8
08_01_0510 + 4455805-4456637,4457837-4457912 29 2.8
05_04_0337 - 20372378-20373094,20373320-20373379,20373992-203742... 29 3.7
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 29 3.7
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 28 4.9
03_02_0187 - 6248226-6249226,6249296-6250148 28 4.9
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 6.5
08_02_0781 - 21157715-21157783,21158869-21159087,21161181-211613... 28 6.5
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 28 6.5
06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699 27 8.6
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 27 8.6
01_01_0070 - 542603-542686,542803-543441 27 8.6
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 270 PKPPELSPIYLPVSP-VMPVQPLTSLTL-TQTASGPE 374
P+PP+ SPI++P SP P P +SL T TA P+
Sbjct: 69 PRPPQSSPIFVPDSPNPSPAAPTSSLASGTSTARPPQ 105
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 36 FLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWD 167
FL+LL+ +A AAP ++I Y+ R +++G + A+D
Sbjct: 10 FLLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYD 53
>08_02_0602 + 19183549-19184919
Length = 456
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 245 LCK*ASAVAQTAGIIAHLSAGIPGDACAAANVINS 349
+C+ A+A + + A L AG+ DACA +V +S
Sbjct: 189 MCRQAAAAGASGSVAAALPAGVLDDACADLDVTSS 223
>07_01_0310 + 2209084-2209554
Length = 156
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = -2
Query: 405 GPRDCLKPAKFPDLTPSV*ELMTLAAAQASPGIPADRWAIIPAVWATADAYLHNRPGWP 229
G C D TP +TL A P IPA IPAV +A L P P
Sbjct: 7 GSSSCQAARLLADATPPAVPAVTLPPMPAIPAIPAATLPPIPAVPTVPNAALPPMPAVP 65
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 224 GHGQPGRLCK*ASAVAQTAGIIAHLSAGIPG 316
G GR + V +T G+++ +S+G+PG
Sbjct: 97 GRAPAGRAASKGAGVGETLGVVSRVSSGVPG 127
>08_01_0510 + 4455805-4456637,4457837-4457912
Length = 302
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 490 WSDRVSELTRVDDELID--KIQVLSHVSEEG 404
W D+V ELT D+ ID +++V+SH E G
Sbjct: 69 WRDKVRELTFDIDDCIDSFEVRVISHQQERG 99
>05_04_0337 -
20372378-20373094,20373320-20373379,20373992-20374266,
20374358-20374619
Length = 437
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = +3
Query: 249 ASKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSD 416
A H +P PP L P+ P S L +S P+TS A D S SD
Sbjct: 380 AGSHHHFPLPPSQLMPQLGTLPISPPLAAVSDKLWDWSSVPDTSTARDYDSSGFSD 435
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 375 FPDLTPSV*ELMTLAAAQASPGIPADRWAIIP---AVWATADAYLHNRPGWPCPSRSLE 208
FPD P + L+T + PG+ + +P A W ++ +R G+P P LE
Sbjct: 811 FPDDLPPIGTLVTAPSVLIHPGVLQENSTEVPPSPASWCSSPPDEMSRGGYPSPVSPLE 869
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 249 ASKHQRWPKPPELSPIYLPVSPV--MPVQPLTSLTLTQTASGPETSPASDNLSV 404
A +HQ P PP +P +P+ P QP T+ A P +P + S+
Sbjct: 412 ARQHQPQPTPPPPQAAPIPAAPLQQQPPQPQHKETIHHEAVTPRRAPPTSGSSL 465
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 249 ASKHQRWPKPPEL---SPIYLPVSPVMPVQPLTS 341
A K Q WPKP + S +Y P+SP V+ + S
Sbjct: 43 AQKVQVWPKPTSISWPSAVYAPLSPSFSVRAVLS 76
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 197 GDAFVSVIDVVPCT*DYGTSFS 132
G F SV+D VPC DY FS
Sbjct: 107 GTGFYSVVDAVPCRRDYLKMFS 128
>08_02_0781 -
21157715-21157783,21158869-21159087,21161181-21161329,
21161694-21161932,21162045-21162229
Length = 286
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 493 GWSDRVSELTRVDDELIDKIQVLSHVSEEGT 401
G S RVSEL ++ L DK+ V+ S GT
Sbjct: 59 GVSGRVSELVEIEPVLRDKVPVIRRFSGGGT 89
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 290 AHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFF 412
+ G+PG +C+ A +N+ ++G + AG +++ P F
Sbjct: 168 SRFGVGVPGYSCSNATKVNATSEGEKPELPAGDGEAVAPVF 208
>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
Length = 240
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 252 SKHQRWPKPPELSPIYLPVSPVMPVQ 329
SKH P PP +P P SP+ P +
Sbjct: 81 SKHHHTPPPPSPTPRPSPPSPICPYE 106
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 336 LAAAQASPGIPADRWAIIPAVWATAD 259
LAA A G P R AI A WAT D
Sbjct: 238 LAAGTAHGGAPRARLAIYKACWATPD 263
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +3
Query: 231 ASQGDYASKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 407
A+Q A+ Q P P +P P +P P T A P +PA ++ P
Sbjct: 25 AAQSPAAAPAQPTPTPVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPP 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,843
Number of Sequences: 37544
Number of extensions: 356698
Number of successful extensions: 1398
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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