Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0426
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.43 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.75 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   4.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 199 FWRRTFAASARVQLKLDTVELLATSAAQSQ 110
           FW +  AA ARV L + ++  L+T  A+SQ
Sbjct: 266 FWIKPEAAPARVTLGVTSLLTLSTQHAKSQ 295


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 199 FWRRTFAASARVQLKLDTVELLATSAAQSQ 110
           FW +  A  ARV L + ++  LAT   QSQ
Sbjct: 235 FWIKPEAIPARVTLGVTSLLTLATQNTQSQ 264


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 280 SFIDIRPLKSSQRSNTSRVEDHTRPSC 200
           +F+ ++P+KS       ++  + R SC
Sbjct: 14  TFVALKPVKSMSADQVEKLAKNMRKSC 40


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 199 FWRRTFAASARVQLKLDTVELLAT 128
           FW    A SARV L + TV  + T
Sbjct: 263 FWINHEATSARVALGITTVLTMTT 286


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 245 TVKYLPCRGSHATIMFLASNICSVSSGT 162
           T KY+     +A  + LAS I S S+GT
Sbjct: 2   TAKYVFTTLINAAFLCLASTILSESAGT 29


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 513 YPTSVPVQEGFPPKHSPRTAQTP 445
           YP ++ +  G  P H P   +TP
Sbjct: 453 YPAAIQI--GHTPHHHPHPPETP 473


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = +3

Query: 96  AFLHPWLCAADVARSSTVSSFNCTRADAA 182
           AF  PWL    +   +    F+C   + A
Sbjct: 51  AFSRPWLLQGHIRTHTGEKPFSCQHCNRA 79


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 28  RFPGQLNADLRKLAVNMVPFPRLHFYTP 111
           R+ G L A  RKL  N      +  YTP
Sbjct: 392 RYYGSLQAAARKLLGNAPEVENIWDYTP 419


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 199 FWRRTFAASARVQLKLDTVELLATSAA 119
           FW    A  ARV L + T+  +AT  +
Sbjct: 263 FWLDQSAVPARVSLGVTTLLTMATQTS 289


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 199 FWRRTFAASARVQLKLDTVELLATSAA 119
           FW    A  ARV L + T+  +AT  +
Sbjct: 263 FWLDQSAVPARVSLGVTTLLTMATQTS 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,895
Number of Sequences: 438
Number of extensions: 3913
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)