Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0426
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 188 2e-48
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 187 6e-48
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 186 7e-48
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 186 1e-47
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 186 1e-47
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 186 1e-47
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 186 1e-47
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 180 9e-46
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 178 3e-45
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 93 1e-19
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 91 5e-19
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 91 5e-19
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 83 1e-16
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 83 1e-16
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 83 1e-16
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 63 2e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 63 2e-10
At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase fa... 30 1.0
At1g14770.2 68414.m01766 expressed protein 28 5.4
At1g14770.1 68414.m01765 expressed protein 28 5.4
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 27 7.2
At5g51140.1 68418.m06341 pseudouridine synthase family protein l... 27 9.5
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 27 9.5
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 27 9.5
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 27 9.5
At2g20710.2 68415.m02432 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g20710.1 68415.m02431 pentatricopeptide (PPR) repeat-containi... 27 9.5
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 188 bits (458), Expect = 2e-48
Identities = 97/188 (51%), Positives = 116/188 (61%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+DAKNMM A DPRHGRYLT + + G+ K++ + K + P +
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS 351
Query: 361 PCVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPRA 540
LK + + R AMFRRKAFLHWYTG + A
Sbjct: 352 TVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 541 ESNMNDLI 564
ESNMNDL+
Sbjct: 412 ESNMNDLV 419
Score = 156 bits (379), Expect = 9e-39
Identities = 77/118 (65%), Positives = 88/118 (74%), Gaps = 3/118 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXATAD 599
+F+RVSEQF + A +HW+ GMDEMEFTE SEYQQYQ ATAD
Sbjct: 377 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 187 bits (455), Expect = 6e-48
Identities = 95/188 (50%), Positives = 115/188 (61%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+DAKNMM A DPRHGRYLT + + G+ K++ + K + P +
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKS 351
Query: 361 PCVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPRA 540
LK + + R AMFRRKAFLHWYTG + A
Sbjct: 352 SVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 541 ESNMNDLI 564
ESNMNDL+
Sbjct: 412 ESNMNDLV 419
Score = 150 bits (364), Expect = 6e-37
Identities = 74/117 (63%), Positives = 88/117 (75%), Gaps = 3/117 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG++S KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDI P+GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXATA 596
+F+RVSEQF + A +HW+ GMDEMEFTE +EYQQYQ ATA
Sbjct: 377 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATA 430
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 186 bits (454), Expect = 7e-48
Identities = 95/188 (50%), Positives = 115/188 (61%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+DAKNMM A DPRHGRYLT + + G+ K++ + K + P +
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKS 351
Query: 361 PCVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPRA 540
LK + + R AMFRRKAFLHWYTG + A
Sbjct: 352 SVCDIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 541 ESNMNDLI 564
ESNMNDL+
Sbjct: 412 ESNMNDLV 419
Score = 148 bits (359), Expect = 2e-36
Identities = 73/116 (62%), Positives = 86/116 (74%), Gaps = 3/116 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI P GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXAT 593
+F+RVSEQF + A +HW+ GMDEMEFTE +EYQQYQ AT
Sbjct: 377 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 186 bits (453), Expect = 1e-47
Identities = 95/188 (50%), Positives = 116/188 (61%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+D+KNMM A DPRHGRYLT + + G+ K++ + K + P +
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKS 351
Query: 361 PCVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPRA 540
LK + + R AMFRRKAFLHWYTG + A
Sbjct: 352 TVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 541 ESNMNDLI 564
ESNMNDL+
Sbjct: 412 ESNMNDLV 419
Score = 156 bits (379), Expect = 9e-39
Identities = 77/118 (65%), Positives = 88/118 (74%), Gaps = 3/118 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXATAD 599
+F+RVSEQF + A +HW+ GMDEMEFTE SEYQQYQ ATAD
Sbjct: 377 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 186 bits (453), Expect = 1e-47
Identities = 95/188 (50%), Positives = 116/188 (61%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+D+KNMM A DPRHGRYLT + + G+ K++ + K + P +
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKS 351
Query: 361 PCVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPRA 540
LK + + R AMFRRKAFLHWYTG + A
Sbjct: 352 TVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 541 ESNMNDLI 564
ESNMNDL+
Sbjct: 412 ESNMNDLV 419
Score = 156 bits (379), Expect = 9e-39
Identities = 77/118 (65%), Positives = 88/118 (74%), Gaps = 3/118 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXATAD 599
+F+RVSEQF + A +HW+ GMDEMEFTE SEYQQYQ ATAD
Sbjct: 377 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 186 bits (453), Expect = 1e-47
Identities = 98/189 (51%), Positives = 118/189 (62%), Gaps = 1/189 (0%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+D+KNMM A DPRHGRYLT + + G+ K++ + K + P +
Sbjct: 292 QMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS 351
Query: 361 P-CVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPR 537
C RG L + + R AMFRRKAFLHWYTG +
Sbjct: 352 SVCDIAPRG-LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410
Query: 538 AESNMNDLI 564
AESNMNDL+
Sbjct: 411 AESNMNDLV 419
Score = 154 bits (373), Expect = 5e-38
Identities = 76/118 (64%), Positives = 88/118 (74%), Gaps = 3/118 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI PRGL MASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXATAD 599
+F+RVSEQF + A +HW+ GMDEMEFTE SEYQQYQ ATAD
Sbjct: 377 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 186 bits (453), Expect = 1e-47
Identities = 96/188 (51%), Positives = 115/188 (61%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR LTVPELT
Sbjct: 232 TMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQ 291
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+DAKNMM A DPRHGRYLT + + G+ K++ + K + P +
Sbjct: 292 QMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKS 351
Query: 361 PCVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPRA 540
LK + + R AMFRRKAFLHWYTG + A
Sbjct: 352 TVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 411
Query: 541 ESNMNDLI 564
ESNMNDL+
Sbjct: 412 ESNMNDLV 419
Score = 156 bits (379), Expect = 9e-39
Identities = 77/118 (65%), Positives = 88/118 (74%), Gaps = 3/118 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ
Sbjct: 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQE 376
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXATAD 599
+F+RVSEQF + A +HW+ GMDEMEFTE SEYQQYQ ATAD
Sbjct: 377 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 180 bits (437), Expect = 9e-46
Identities = 94/188 (50%), Positives = 114/188 (60%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT
Sbjct: 233 TMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQ 292
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+D+KNMM A DPRHGRYLT + I G+ K++ + K + P +
Sbjct: 293 QMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKS 352
Query: 361 PCVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPRA 540
LK + + R AMFRRKAFLHWYTG + A
Sbjct: 353 SVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 412
Query: 541 ESNMNDLI 564
ESNMNDL+
Sbjct: 413 ESNMNDLV 420
Score = 155 bits (376), Expect = 2e-38
Identities = 75/118 (63%), Positives = 90/118 (76%), Gaps = 3/118 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDIPP+GLKMA+TF+GN+T+IQ
Sbjct: 318 FRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQE 377
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXATAD 599
+F+RVSEQF + A +HW+ GMDEMEFTE +EYQQYQ ATAD
Sbjct: 378 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 432
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 178 bits (433), Expect = 3e-45
Identities = 93/188 (49%), Positives = 114/188 (60%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
TMSG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT
Sbjct: 233 TMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQ 292
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTARILSSGYPITARL 360
QM+DAKNMM A DPRHGRYLT + + G+ K++ + K + P +
Sbjct: 293 QMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKS 352
Query: 361 PCVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWAMFRRKAFLHWYTGGVWMKWSSPRA 540
+K + + R AMFRRKAFLHWYTG + A
Sbjct: 353 SVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEA 412
Query: 541 ESNMNDLI 564
ESNMNDL+
Sbjct: 413 ESNMNDLV 420
Score = 155 bits (377), Expect = 2e-38
Identities = 75/118 (63%), Positives = 89/118 (75%), Gaps = 3/118 (2%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDIPP G+KMASTF+GN+T+IQ
Sbjct: 318 FRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQE 377
Query: 435 IFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEYQQYQXATAD 599
+F+RVSEQF + A +HW+ GMDEMEFTE SEYQQYQ ATAD
Sbjct: 378 MFRRVSEQFTAMFRRK---AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 432
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 93.1 bits (221), Expect = 1e-19
Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 8/177 (4%)
Frame = +1
Query: 1 TMSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTL 180
T+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + +VPE+T
Sbjct: 234 TISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITT 293
Query: 181 QMFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK-TARILS---SGYP- 345
+F+ NMM CDPRHG+Y+ + G+ + K + + + K T + + +G+
Sbjct: 294 SVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKC 353
Query: 346 -ITARLPCVTYLRGVLKWLRP-SLVTRRPYRPYSRGCLSSSW-AMFRRKAFLHWYTG 507
I + P V + K R +++ + + M+ ++AF+HWY G
Sbjct: 354 GINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVG 410
Score = 52.0 bits (119), Expect = 3e-07
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 401
C +RG + K+V+ +A I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQF-VGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSE 569
I N TA+ +F R+ +F + Y S A VHW+ GM+E EF+E R +
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMY----SKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 570 YQQ 578
Y++
Sbjct: 432 YEE 434
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 91.1 bits (216), Expect = 5e-19
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 8/176 (4%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNA 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK-TARILS---SGYP-- 345
+F+ +MM CDPRHG+Y+ + G+ + K + + +TK T + + +G+
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCG 354
Query: 346 ITARLPCVTYLRGVLKWLRP-SLVTRRPYRPYSRGCLSSSW-AMFRRKAFLHWYTG 507
I + P V + K R +++ + + M+ ++AF+HWY G
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG 410
Score = 51.6 bits (118), Expect = 4e-07
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEY 572
I N TA+ +F R+ +F + A+ A VHW+ GM+E EF+E R +Y
Sbjct: 376 CMISNNTAVAEVFSRIDHKF-DLMYAKR--AFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
Query: 573 QQ 578
++
Sbjct: 433 EE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 91.1 bits (216), Expect = 5e-19
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 8/176 (4%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T
Sbjct: 235 ISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNA 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK-TARILS---SGYP-- 345
+F+ +MM CDPRHG+Y+ + G+ + K + + +TK T + + +G+
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCG 354
Query: 346 ITARLPCVTYLRGVLKWLRP-SLVTRRPYRPYSRGCLSSSW-AMFRRKAFLHWYTG 507
I + P V + K R +++ + + M+ ++AF+HWY G
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVG 410
Score = 51.6 bits (118), Expect = 4e-07
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEY 572
I N TA+ +F R+ +F + A+ A VHW+ GM+E EF+E R +Y
Sbjct: 376 CMISNNTAVAEVFSRIDHKF-DLMYAKR--AFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
Query: 573 QQ 578
++
Sbjct: 433 EE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 50.4 bits (115), Expect = 9e-07
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEY 572
I N+T++ +F R+ +F + A+ A VHW+ GM+E EF+E R +Y
Sbjct: 376 CMISNSTSVAEVFSRIDHKF-DLMYAKR--AFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
Query: 573 QQ 578
++
Sbjct: 433 EE 434
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP 380
C +RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 50.4 bits (115), Expect = 9e-07
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEY 572
I N+T++ +F R+ +F + A+ A VHW+ GM+E EF+E R +Y
Sbjct: 376 CMISNSTSVAEVFSRIDHKF-DLMYAKR--AFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
Query: 573 QQ 578
++
Sbjct: 433 EE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/104 (35%), Positives = 59/104 (56%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNS 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTK 315
F+ +MM CDPRHG+Y+ + G+ + K + + +TK
Sbjct: 295 AFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 50.4 bits (115), Expect = 9e-07
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 401
C +RG + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVGYV*AESLLALVHWW---GMDEMEFTEGRVQHE*FNSEY 572
I N+T++ +F R+ +F + A+ A VHW+ GM+E EF+E R +Y
Sbjct: 376 CMISNSTSVAEVFSRIDHKF-DLMYAKR--AFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
Query: 573 QQ 578
++
Sbjct: 433 EE 434
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTL 180
MS TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 181 QMFDAKNMMVACDPRH-----GRYLTVATISGGE 267
++ KN+MV+ R+ +Y+++ I GE
Sbjct: 296 RLLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTL 180
MS TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMR 295
Query: 181 QMFDAKNMMVACDPRH-----GRYLTVATISGGE 267
++ KN+MV+ R+ +Y+++ I GE
Sbjct: 296 RLLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
Score = 32.3 bits (70), Expect = 0.25
Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Frame = +3
Query: 123 ADVARSSTVSSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDFRGRMSMKEVDEQLAN 302
A+V R +TV N+ + +S + + +G + +V E L
Sbjct: 282 ANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQR 341
Query: 303 IQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNTTAIQTIFKRVSEQF 461
I+ + F+EW P + ++A+ P +++ + + T+I+ +F + Q+
Sbjct: 342 IRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQY 397
>At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|Q9ZWQ9 Flavonol synthase
(EC 1.14.11.-) {Citrus unshiu}; contains Pfam profile
PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 364
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 111 RGVEMQARKRHHVHSQLPQISVQLSRKP 28
RGV + + K HH+H Q+P I + KP
Sbjct: 39 RGVVVSSLKTHHLHHQIPVIDLSKLSKP 66
>At1g14770.2 68414.m01766 expressed protein
Length = 429
Score = 27.9 bits (59), Expect = 5.4
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = -2
Query: 578 LLVFRIKSFMLDSALGELHFIHTPPVYQCKKAFRLNIAH-ELLRHPL-EYGLYGRRVTNE 405
+L R+ FM D ++ + + + + K F L++++ ++LR L E + RV
Sbjct: 66 VLSLRVLEFMFDPSMSDANGVGVASALEEKVEFDLSLSNADVLRGILKEIPVAELRVGMP 125
Query: 404 GRSHFKTPRRYVTHGNLAVIGYPLDKIRAVFVLNIRQLLVNFFHRHSP 261
S F ++ H NL + L+K+R V ++ + F + P
Sbjct: 126 ELSKFNV-LPFIAHKNLCLPQCALEKLRDVSLMENQTSATPFMETNDP 172
>At1g14770.1 68414.m01765 expressed protein
Length = 429
Score = 27.9 bits (59), Expect = 5.4
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = -2
Query: 578 LLVFRIKSFMLDSALGELHFIHTPPVYQCKKAFRLNIAH-ELLRHPL-EYGLYGRRVTNE 405
+L R+ FM D ++ + + + + K F L++++ ++LR L E + RV
Sbjct: 66 VLSLRVLEFMFDPSMSDANGVGVASALEEKVEFDLSLSNADVLRGILKEIPVAELRVGMP 125
Query: 404 GRSHFKTPRRYVTHGNLAVIGYPLDKIRAVFVLNIRQLLVNFFHRHSP 261
S F ++ H NL + L+K+R V ++ + F + P
Sbjct: 126 ELSKFNV-LPFIAHKNLCLPQCALEKLRDVSLMENQTSATPFMETNDP 172
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 210 RV*SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAV 365
R+ + RE R D+ R ++ K D L ++ KN +E++PN C + +
Sbjct: 200 RIQGTLREWVMR-DEVRRFIAKKFKDFLLTYVKPKNENGDIEYVPNKCSLEI 250
>At5g51140.1 68418.m06341 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 395
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -2
Query: 425 GRRVTNEGRSHFK-TPRRY----VTHGNLAVIGYPLDKIRAVFVLNIRQLLVNFFHRHSP 261
G+ + + FK PR Y V G + V G + + +++ Q + +F HRH P
Sbjct: 73 GKTIVDLFADEFKGRPRDYYVGAVKSGRIKVDG---EIVPVSYIVKSSQKITHFLHRHEP 129
Query: 260 PEIVATVKYL 231
P ++ V L
Sbjct: 130 PVMIDDVVIL 139
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 525 PFHPYPTSVPVQEGFPPKHSPRTAQTPS*IWSVWPSCYQ*RSKPF*DP 382
P H P PV PP SP +Q+P ++S P + S P P
Sbjct: 608 PVHSPPPPPPVYSPPPPVFSPPPSQSPPVVYSPPPRPPKINSPPVQSP 655
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 219 SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYF 329
SS ++V DDF G + M EVD L N + T F
Sbjct: 173 SSAKDVGMCEDDFYGNLGMDEVDMALENYEELFGTAF 209
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 219 SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNSTYF 329
SS ++V DDF G + M EVD L N + T F
Sbjct: 173 SSAKDVGMCEDDFYGNLGMDEVDMALENYEELFGTAF 209
>At2g20710.2 68415.m02432 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 395
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 283 LTSNWRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRPYRPY 438
L WR+ T T L+ GY + ++ + V KW R V++ +RP+
Sbjct: 281 LVQKWRVEDTSTWERLALGYKMAGKME-----KAVEKWKRAIEVSKPGWRPH 327
>At2g20710.1 68415.m02431 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 490
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 283 LTSNWRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRPYRPY 438
L WR+ T T L+ GY + ++ + V KW R V++ +RP+
Sbjct: 376 LVQKWRVEDTSTWERLALGYKMAGKME-----KAVEKWKRAIEVSKPGWRPH 422
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,482
Number of Sequences: 28952
Number of extensions: 313078
Number of successful extensions: 995
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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