Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0425
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    28   1.5  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   3.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   7.9  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 375 YLDAQ-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 479
           Y DA  Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 70  YTDAGGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 482 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 378
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 158 ISKSPSCGF*KQQWERYLYF 217
           + K P CGF    W  +L+F
Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,697
Number of Sequences: 5004
Number of extensions: 55900
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)