Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0425
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                        108   5e-24
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    39   0.004
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_33099| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)                   29   4.8  
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             28   8.4  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score =  108 bits (259), Expect = 5e-24
 Identities = 56/102 (54%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
 Frame = +3

Query: 273 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 443
           M T R    EVG  +E L  KY      G  PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1   MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60

Query: 444 DTGSSNLWVPSKKCHYTNIACFCXXXXXXXXXXXXXXMGTQF 569
           DTGSSNLWVPSKKC +TNIAC                 GT+F
Sbjct: 61  DTGSSNLWVPSKKCSWTNIACLLHDKYDSTKSSTYKKNGTEF 102


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = +3

Query: 300 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSK 479
           + G ++ LLR K D    + E L       YY   ++G+PPQ   V+ DTGSSN  V + 
Sbjct: 11  KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69

Query: 480 KCHY 491
              Y
Sbjct: 70  AHPY 73


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 261 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 377
           PL   ++ R H  ++ T LEL+  K   + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150


>SB_33099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 597 RLPEPVLYRETGCPFATYVLDLRLSYLLCRNKRCWCSGTFWKAP 466
           RL E ++  E  C   T VL   L YL+ R  +  C G +W+ P
Sbjct: 447 RLAEVIIIDEC-CKVQTKVLPAILGYLVTRPCQVVCCGDYWQVP 489


>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
          Length = 248

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 413 HAAAVVQGGIRHRILQPLGAFQKVPLHQHRLFLHNKYDSRKSKTYVANGHPVSRYSTGSG 592
           H + + + G ++  L P G+       ++RL LH    SR SK Y    HP+   ST S 
Sbjct: 15  HGSTISRFGKKYHSLPPYGSTISRFSKKYRLLLHGSTISRLSKKY----HPLLHGSTISS 70

Query: 593 --SLLRASSPLMMSPXAGLK 646
             + + +S P   +  +G K
Sbjct: 71  ARNTISSSFPSTTAHISGYK 90


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 258 VPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 365
           V L  +K +  ++++ GT+L + +LK   T P P P
Sbjct: 247 VLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,269,203
Number of Sequences: 59808
Number of extensions: 451632
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)