Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0424
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   156   2e-39
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   101   1e-22
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   100   2e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    81   1e-16
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    28   1.1  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.0  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.0  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   3.4  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   3.4  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   4.5  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    26   4.5  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   7.9  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   7.9  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   7.9  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  156 bits (379), Expect = 2e-39
 Identities = 80/137 (58%), Positives = 92/137 (67%)
 Frame = +2

Query: 257 EASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 436
           EA+GGKYVPRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL
Sbjct: 53  EAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAEL 112

Query: 437 VDSVLDVVRKEAEGCDCLQGFQLTILWEEVLDLVWGLF*FPKSVKSIQIVL*IRFPWYQV 616
            D+VLDVVR+EAE CD LQGFQLT           G     K  +     +   F     
Sbjct: 113 ADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPA 172

Query: 617 QXFPILWVEPYNATLSV 667
                  VEPYNATLS+
Sbjct: 173 PKSSDTVVEPYNATLSM 189



 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 36/56 (64%), Positives = 44/56 (78%)
 Frame = +3

Query: 102 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYTKLQG 269
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D+ G Y G S+ Q ER+NVY+ +  G
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAG 56



 Score = 34.7 bits (76), Expect = 0.013
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +1

Query: 553 ISKIREEYPDRIMNTFXXXXXXXXXDTV 636
           +SKIREEYPDR+M TF         DTV
Sbjct: 152 LSKIREEYPDRMMATFSVAPAPKSSDTV 179


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  101 bits (242), Expect = 1e-22
 Identities = 51/136 (37%), Positives = 73/136 (53%)
 Frame = +2

Query: 257 EASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 436
           E   GKYVPR++ VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G EL
Sbjct: 55  ETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114

Query: 437 VDSVLDVVRKEAEGCDCLQGFQLTILWEEVLDLVWGLF*FPKSVKSIQIVL*IRFPWYQV 616
           VD V D +R+ A+ C  LQGF +   +       +G     +          ++F  Y  
Sbjct: 115 VDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPA 174

Query: 617 QXFPILWVEPYNATLS 664
                  VEPYN+ L+
Sbjct: 175 PQVSTSVVEPYNSVLT 190



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +3

Query: 102 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 203
           MREI+ I  GQ G QIG   WE+   EHGI   G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  100 bits (239), Expect = 2e-22
 Identities = 41/81 (50%), Positives = 58/81 (71%)
 Frame = +2

Query: 257 EASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 436
           E   GK+VPR++ VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E+
Sbjct: 59  ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118

Query: 437 VDSVLDVVRKEAEGCDCLQGF 499
           +DSVL+ +R+ A+ C  LQGF
Sbjct: 119 IDSVLERIRRMADNCSGLQGF 139



 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 102 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 227
           MRE++ +  GQ G QIG   WE+   EHGI   G  + +S++
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEV 42


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 31/86 (36%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
 Frame = +2

Query: 254 YEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEG 427
           Y++   +Y+PRA+++DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+  
Sbjct: 53  YQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHA 111

Query: 428 AELVDSVLDVVRKEAEGCDCLQGFQL 505
             + + ++D++ +EA+G D L+GF L
Sbjct: 112 ERIFEDIMDMIDREADGSDSLEGFSL 137



 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +3

Query: 105 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYY 254
           REI+ +QAGQCGNQIG++FW+ +  EHGI   G     +   ++R +V++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFF 52


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 393 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 298
           P+   PK  L  R I PNGPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 582 SYYEYVFRGTKSKXFRYCG*SHITQRYQFHQLVENTD 692
           SY+E  F+G KS  F+    S + + Y F QL+   D
Sbjct: 330 SYFENCFKGVKSLEFKIWSRS-LRKNYNFEQLLRARD 365


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = +1

Query: 97  QS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPTCSLNASMSTIRSFRGQV 276
           +S   S +S   ++  +S  SS   S++S++ +    ++A+P+ S ++S  +  SF    
Sbjct: 171 KSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITST 230

Query: 277 RPAS 288
            PAS
Sbjct: 231 TPAS 234


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 404 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQLTILWEEVLD 532
           A+GH   G ELV +  D +RK++E    L+     I+  E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALEVCPDRIVCNEFLE 225


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 335 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 436
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 170 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 66
           +F E+   + P   +LD+DD  +     + P E+N
Sbjct: 36  FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 431 ELVDSVLDVVRKEAEGCDCLQGFQLTI-LWEEVLDLV 538
           ++   +LDV+RK+    DC  G  + I L +E +DLV
Sbjct: 70  DVYPEMLDVLRKKFPNVDCRAGSAMAIPLEDESVDLV 106


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 67  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 225
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 67  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 225
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 512 LWEEVLDLVWGLF-*FPKSVKSIQIVL*IRF 601
           LW  V++++WGL   F  +V S++ ++ +RF
Sbjct: 98  LWFSVMNILWGLMTIFSFAVHSVRALMILRF 128


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 127 AWMWTISLMIALKIWNPPNRI 65
           AW+W ++LM+    +  PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 443 NQPVQPPLCNVLSPSYSPPQT 381
           N+P +PP+ N  +    PPQT
Sbjct: 86  NEPAKPPIPNAATKPTFPPQT 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,672
Number of Sequences: 5004
Number of extensions: 64195
Number of successful extensions: 209
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)