Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0424
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.13 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.13 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 266 LKLRIVDIDAFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDF 108
           +++R V   A+K+ V V   ++RG  AVL R   P    DL+  ++ L    F
Sbjct: 122 VQVRAVVAQAYKVDVEVIGGASRGCTAVL-RCVVPSFVKDLVRVVSWLQEPSF 173



 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 371 RSCPVGRFAQTARNGRSPWFQAQGPPSQLAGRTCPLK 261
           ++CP   +   A+ G  P     GP ++L G    L+
Sbjct: 262 QACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALE 298


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 266 LKLRIVDIDAFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDF 108
           +++R V   A+K+ V V   ++RG  AVL R   P    DL+  ++ L    F
Sbjct: 122 VQVRAVVAQAYKVDVEVIGGASRGCTAVL-RCVVPSFVKDLVRVVSWLQEPSF 173



 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 371 RSCPVGRFAQTARNGRSPWFQAQGPPSQLAGRTCPLK 261
           ++CP   +   A+ G  P     GP ++L G    L+
Sbjct: 262 QACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALE 298


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 693 HQCFLPIGGTDSVALYGSTHSIGNXWTWYHGKRI 592
           H C L +G       YG+  ++ N W    G  I
Sbjct: 115 HICMLELGHEVCGRFYGNIQTVXNNWLLLEGHSI 148


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 437 VDSVLDVVRKEAEGCDCLQG 496
           +DS+++++R   + CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 346 PKRPGTDGVHGSRLKVHH 293
           P+ PGT  ++ ++LK HH
Sbjct: 139 PREPGTPRINFTKLKRHH 156


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = -2

Query: 451 QYRINQFSPLCVMSFRPVIPRPRLSEDEVVRSEDLPKRPGTDGVHGSRLK 302
           Q+     SP+   S+ P  P  ++  DE+ +   L     +DG    + K
Sbjct: 127 QHNNGYASPMSTSSYDPYSPNSKIGRDELSQPGSLNGYGSSDGCDARKKK 176


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 178 TSTALTPRVLTAATPTCSLNASMST 252
           T+T  T    T  TP  + NAS +T
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNASATT 688


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 25  FFLHDQILESVYL 63
           FFLH Q+L   YL
Sbjct: 259 FFLHKQVLNRYYL 271


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 603 GKRIHNTIWILFTDFGNQKSPHTRSSTSSQRIV 505
           G      IW+  T F N+K  +   +T+S   +
Sbjct: 86  GSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI 118


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 603 GKRIHNTIWILFTDFGNQKSPHTRSSTSSQRIV 505
           G      IW+  T F N+K  +   +T+S   +
Sbjct: 86  GSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI 118


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 25  FFLHDQILESVYL 63
           FFLH Q+L   YL
Sbjct: 259 FFLHKQVLNRYYL 271


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 603 GKRIHNTIWILFTDFGNQKSPHTRSSTSSQRIV 505
           G      IW+  T F N+K  +   +T+S   +
Sbjct: 25  GSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,137
Number of Sequences: 438
Number of extensions: 4830
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)