Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0422
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    30   0.25 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   7.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   9.4  

>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 210 VANCASTMYAVCIMYPIRCHPTPPSCQNPEK 302
           + +C+ T  + CI   +R HP  P+C+ PE+
Sbjct: 41  ITSCSHTFCSFCIRDYLREHPMCPACRAPEQ 71


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 518 KIRRLPVSLSFFRIFASLDFFFKNFSTARHAP 423
           KI R+ V +S + I A +  +FK+ +   H P
Sbjct: 691 KIVRVVVFISLYAIIAGVFIYFKDVTFGMHGP 722


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +3

Query: 249 MYPIRCHPTPP--SCQNP---EKCLKKTTSKGVRPCRSAVSIMST 368
           +YP R  PTPP  S  +P    + +K TTS   R     VS  ST
Sbjct: 251 LYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKST 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,117
Number of Sequences: 5004
Number of extensions: 49031
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)