Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0419
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   112   1e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    66   9e-13
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    56   2e-09
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    50   1e-07
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   0.69 
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    23   8.5  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    23   8.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  112 bits (270), Expect = 1e-26
 Identities = 47/63 (74%), Positives = 54/63 (85%)
 Frame = +3

Query: 66  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 245
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 246 PRA 254
           PRA
Sbjct: 61  PRA 63



 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/13 (84%), Positives = 12/13 (92%), Gaps = 1/13 (7%)
 Frame = +2

Query: 248 PR-LLVDLEPGTM 283
           PR +LVDLEPGTM
Sbjct: 61  PRAVLVDLEPGTM 73


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 66.5 bits (155), Expect = 9e-13
 Identities = 27/62 (43%), Positives = 43/62 (69%)
 Frame = +3

Query: 69  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 248
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 249 RA 254
           RA
Sbjct: 63  RA 64


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 55.6 bits (128), Expect = 2e-09
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 66  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 239
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 240 YVPRA 254
           YVPR+
Sbjct: 61  YVPRS 65


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 49.6 bits (113), Expect = 1e-07
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +3

Query: 66  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 227
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 228 SGGKYVPRA 254
             GK+VPR+
Sbjct: 61  GQGKFVPRS 69


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 105 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 206
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 183 SDLQLERINVYYNEASGGKYVPRAS 257
           S L +E I+ Y   A   KY+PR++
Sbjct: 635 SFLDIENIDEYLESAENMKYLPRST 659


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 255 SSSTWSPAPWTLXA 296
           SSST SPAPW   A
Sbjct: 417 SSSTSSPAPWAKPA 430


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 281 WCRAPSRRGGAGHVLAAGGFIVVYIDALQLQVRVP 177
           WC      G AG++L   G +V + D    QVR+P
Sbjct: 26  WCVMTYTFGVAGYMLGQRGLLVQHED----QVRIP 56


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 157 SMPCSSEMISQNLAPIWLPH*PAWICTISLILFYLC 50
           S+   SE+ S N+  + +   P  IC+ SL  F LC
Sbjct: 683 SLAKMSEIRSLNVQTVSVKGFPRRICSNSLFYFVLC 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,857
Number of Sequences: 5004
Number of extensions: 21474
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)