Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0418
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    27   3.5  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    27   3.5  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    27   3.5  
Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    26   4.7  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    26   4.7  
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z93785-5|CAB07861.3|  321|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 KQVDIDSNGIRLL**YSFLCEMYDED 289
           K V +D +G+RLL    FLC   DED
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDED 444


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 KQVDIDSNGIRLL**YSFLCEMYDED 289
           K V +D +G+RLL    FLC   DED
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDED 444


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 124 FLRILQVFNNNNYTCYPID---FNIAYFYYLT 210
           F+   Q +++N YTC PI    ++ AY  Y+T
Sbjct: 155 FMYEQQTYSSNGYTCAPIHPPIYHFAYQVYMT 186


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 KQVDIDSNGIRLL**YSFLCEMYDED 289
           K V +D +G+RLL    FLC   DED
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDED 444


>Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical
           protein C33D9.4 protein.
          Length = 323

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 159 LYLLSY*LQHCILLLPNINRLISIAMVYDYFDNIVSCVKCMMRML 293
           +++ +Y   +CIL+LP    LI + ++    D  + C K M  ++
Sbjct: 104 IFISTYIFNYCILMLPFYISLIRVVILLRPRDYDIICPKLMFILI 148


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 275 FHTRNYIIKVVVYHCYRYQPVYV 207
           F+TR     V+ +HC  Y P+Y+
Sbjct: 128 FNTRTSYFLVIEHHCGIYNPIYM 150


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 124 FLRILQVFNNNNYTCYPIDFNIAYFYY 204
           F+   Q +++N YTC PI   I +F Y
Sbjct: 155 FMYEQQTYSSNGYTCAPIHPPIYHFAY 181


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 227 RYQPVYVR**KYAMLKSIG*QV*LLLLNTCKIRKKYAFIFVVCFI--*HTIFSSKNEFSV 54
           +YQ  ++   KY +L     +  ++++  C     +AF+FV+C I     I S+K+  S+
Sbjct: 185 KYQLNFIWCPKYYVLDPTVWEFVVMMIVACSTTVLFAFVFVLCSITTIAIIHSAKDTMSL 244

Query: 53  MNNXY 39
               Y
Sbjct: 245 QTRRY 249


>Z93785-5|CAB07861.3|  321|Caenorhabditis elegans Hypothetical
           protein W09D10.5 protein.
          Length = 321

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 154 NNYTCYPIDFNIAYFYY 204
           NNYT Y +D ++ +FY+
Sbjct: 113 NNYTMYHVDSSLNHFYW 129


>Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.8 protein.
          Length = 333

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 159 LYLLSY*LQHCILLLPNINRLISIAMVYDYFDNI 260
           L L++  L +CIL+LP +  +I + ++   ++NI
Sbjct: 113 LILVADFLNYCILILPFLVSIIRLTLLRSAYNNI 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,180,970
Number of Sequences: 27780
Number of extensions: 108711
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)