Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0418
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4...    29   0.48 
At3g10320.1 68416.m01238 expressed protein contains Pfam domain,...    27   3.4  

>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
           identical to AtMRP4 GI:2959767 from [Arabidopsis
           thaliana]
          Length = 1516

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 155 LLLNTCKIRKKYA---FIFVVCFI*HTIFSSKNEFSVMN 48
           +LL+ C  R  ++   FIF++CF  H +FSS +  S +N
Sbjct: 37  VLLSPCPQRALFSAVDFIFLLCFALHKLFSSPSSSSEIN 75


>At3g10320.1 68416.m01238 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 494

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 212 KQVDIDSNGIRLL**YSFLCEMYDEDADEIKD 307
           K++ +D NG ++L   S L E YD+D   +KD
Sbjct: 421 KKLGLDYNGYKILPRESSLYEKYDKDDPILKD 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,400,355
Number of Sequences: 28952
Number of extensions: 85937
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)