Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0417
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)                  47   1e-05
SB_15802| Best HMM Match : rve (HMM E-Value=6.9e-21)                   31   0.62 
SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)             28   5.8  
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)              28   5.8  
SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)             27   7.6  

>SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)
          Length = 93

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIGN 434
           ++++FL E YD  A   +   L ++  DNSV++ D K  +  LKR +      D   IG 
Sbjct: 5   ERFAFLAEWYDPQAALTRKYQLLFYASDNSVEMYDIKNRRLFLKRSKCDQYKADDFYIGA 64

Query: 435 IVNIFSNYY-ISRLRSCYTENAFQNV 509
           IVNI S    I+     +T N  +N+
Sbjct: 65  IVNIHSRQLKITDYCDKHTTNRLKNI 90


>SB_15802| Best HMM Match : rve (HMM E-Value=6.9e-21)
          Length = 481

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 267 FLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLP-PLNLDMLQIGNIVN 443
           ++ E + ED D++ +L   Y+ +   + + D    K+   R+ +P  +  ++L+      
Sbjct: 78  YVLEGWPEDKDQVDELAREYWNYKEELSVEDGLLFKS--DRIVVPRSMRAEVLE-----E 130

Query: 444 IFSNYYISRLRSCYTENAFQN 506
           I+  +   R+RSC   NAF+N
Sbjct: 131 IYMEHTWDRVRSCQICNAFRN 151


>SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 386 FQNIFAFLRVYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAI 231
           + N    L V+Y NR++   ++     YFV +L +H+T   I +   YT  +
Sbjct: 57  YTNRVIVLPVHYTNRVI---VLPVNYTYFVIVLPVHYTNRVIVLPVHYTYLV 105


>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
          Length = 488

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 300 EIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDML 422
           ++ ++T+N  PF     ++ ++     L  V+LPP  LD +
Sbjct: 298 DLNEITMNLVPFPKLHYLVSSQTPLYALTDVKLPPRRLDQM 338


>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
          Length = 1078

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/75 (20%), Positives = 37/75 (49%)
 Frame = +3

Query: 228  IDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPL 407
            ++S+ + +LDK   + +    D D+ + + L        +++ + KKGK  + R      
Sbjct: 954  LNSDDVFILDKGKTIYQK--GDYDDFEPVLLRVSDASGQMKLTEMKKGKGRITRNDFDEK 1011

Query: 408  NLDMLQIGNIVNIFS 452
            ++ +   GN++ ++S
Sbjct: 1012 DVFLFDTGNVLFVYS 1026


>SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)
          Length = 251

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDA---KKGKNVLKR 389
           D Y FL    + + +E  D+   YF  +  V+II +   +KG N   R
Sbjct: 185 DVYEFLRAEDEAEVEEFNDILYEYFGMNARVEIITSSRRRKGNNAKSR 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,345
Number of Sequences: 59808
Number of extensions: 226318
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)