Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0416
         (434 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RM68 Cluster: Var1p, putative; n=3; Plasmodium (Vinck...    32   4.6  
UniRef50_Q8Y5Y9 Cluster: Lmo1914 protein; n=13; Listeria|Rep: Lm...    32   6.0  
UniRef50_Q22E76 Cluster: Putative uncharacterized protein; n=3; ...    31   8.0  

>UniRef50_Q7RM68 Cluster: Var1p, putative; n=3; Plasmodium
           (Vinckeia)|Rep: Var1p, putative - Plasmodium yoelii
           yoelii
          Length = 397

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 17  EYPCNYVYKVFILNTILLFFRTLSCKYL*LFRYFSLKMD 133
           +Y  NY  ++FI+NT+  FF T+S   +   +YF  +++
Sbjct: 244 QYEDNYTKELFIINTLKYFFSTISNSIIQNIKYFEKEIE 282


>UniRef50_Q8Y5Y9 Cluster: Lmo1914 protein; n=13; Listeria|Rep:
           Lmo1914 protein - Listeria monocytogenes
          Length = 227

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 141 LFISIFNEKYLNNYKYLHDSVLKNRRIVF 55
           LF++I  + +L N + LHD++L N +IVF
Sbjct: 83  LFVNISYDTFLENQEELHDTLLDNGKIVF 111


>UniRef50_Q22E76 Cluster: Putative uncharacterized protein; n=3;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1654

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 56   NTILLFFRTLSCKYL*LFRYFSLKMDMNNPPNQSYWFVLREDQSN 190
            N  L+FF + S K     +Y    + + NPP Q+Y+  + +DQ N
Sbjct: 1291 NDHLIFFNSQSNKKPIKIKYRKSSLILTNPPPQTYYMHILDDQKN 1335


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,994,959
Number of Sequences: 1657284
Number of extensions: 6565347
Number of successful extensions: 16094
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16086
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)