Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0410
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   102   2e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    64   4e-12
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    49   2e-07
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    46   2e-06
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    27   0.78 

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  102 bits (244), Expect = 2e-23
 Identities = 43/62 (69%), Positives = 49/62 (79%)
 Frame = +3

Query: 66  MRXIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXXLERXXVYYNEASGGKYV 245
           MR IVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+   ER  VY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 246 PR 251
           PR
Sbjct: 61  PR 62



 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 295 SXPFGQIFRPDNFV 336
           S  FG +FRPDN +
Sbjct: 78  SGKFGNLFRPDNII 91


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 64.5 bits (150), Expect = 4e-12
 Identities = 25/61 (40%), Positives = 40/61 (65%)
 Frame = +3

Query: 69  RXIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXXLERXXVYYNEASGGKYVP 248
           R I+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R  V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 249 R 251
           R
Sbjct: 63  R 63


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 66  MRXIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYH--GXSDXXLERXXVYYNEASGGK 239
           MR I+ I  GQ G QIG   WE+   EHGI P G  +    S         +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 240 YVPR 251
           YVPR
Sbjct: 61  YVPR 64


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 45.6 bits (103), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +3

Query: 66  MRXIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGXSDXXLERXXVYYNEA 227
           MR ++ +  GQ G QIG   WE+   EHGI P G        H  +    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 228 SGGKYVPR 251
             GK+VPR
Sbjct: 61  GQGKFVPR 68


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 326 SGRKICPKGXDGQSPXCRAPSRRGGAGHVLAA 231
           +G +   K  DG +P   APS RGG G  +AA
Sbjct: 116 AGYRRAEKKDDGAAPGGFAPSFRGGFGRPVAA 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,059,898
Number of Sequences: 5004
Number of extensions: 15009
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)