Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0410
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 71   PHFVLFM*TINYLTLKIXPH 12
            P   L   T N LT+K+ PH
Sbjct: 1370 PQITLTATTTNSLTMKVRPH 1389



 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 272  APSRRGGAGHVLAAGGFIVVY 210
            APSR+ G+GH    GG +  Y
Sbjct: 1922 APSRQTGSGHG-GHGGLLTPY 1941


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +1

Query: 199 SASMYTTMKPPAASTCPAPPRRLGARXHGLCP 294
           S + Y  + PP+     + P        GLCP
Sbjct: 506 SLTEYHHVAPPSGHHASSAPLLAATLAGGLCP 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,136
Number of Sequences: 438
Number of extensions: 1156
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)