Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0409
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   100   1e-22
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    62   3e-11
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    61   8e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    51   8e-08
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    28   0.51 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   0.90 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   2.1  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   2.7  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   2.7  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   2.7  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   3.6  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   3.6  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   8.4  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    24   8.4  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    24   8.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  100 bits (239), Expect = 1e-22
 Identities = 41/53 (77%), Positives = 50/53 (94%)
 Frame = +2

Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN 415
           +NVY+NEA+GGKYVPRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN
Sbjct: 47  LNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGN 99



 Score = 75.4 bits (177), Expect = 3e-15
 Identities = 31/45 (68%), Positives = 36/45 (80%)
 Frame = +3

Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D+ G Y G S+ Q E
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHE 45


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 62.5 bits (145), Expect = 3e-11
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +2

Query: 260 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
           + +++E   GKYVPR++ VDLEP  +D VR+GP+  +F P+  + G+  A NN
Sbjct: 50  STFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNN 102



 Score = 40.7 bits (91), Expect = 9e-05
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +3

Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 221
           MREI+ I  GQ G QIG   WE+   EHGI   G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 60.9 bits (141), Expect = 8e-11
 Identities = 23/51 (45%), Positives = 35/51 (68%)
 Frame = +2

Query: 266 YYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
           +++E   GK+VPR++ VDLEP  +D VR+GP+  +F P+  V G+  A NN
Sbjct: 56  FFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNN 106



 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 245
           MRE++ +  GQ G QIG   WE+   EHGI   G  + +S++
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEV 42


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 50.8 bits (116), Expect = 8e-08
 Identities = 18/55 (32%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
 Frame = +2

Query: 260 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNN 418
           +V++ ++   +Y+PRA+++DLEP  ++++ S  +G ++ P+N +  ++  GAGNN
Sbjct: 49  DVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNN 103



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +3

Query: 123 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 221
           REI+ +QAGQCGNQIG++FW+ +  EHGI   G
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 411 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 316
           P+   PK  L  R I PNGPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 284 LKLRYSRH*CFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDFPHDCT 111
           ++L  SR  C +   G+  +    V  +   +Y P   S+ +  + RLDVD F H  T
Sbjct: 599 VRLGISRKRCERYPFGILCIIFT-VLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 188 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 84
           +F E+   + P   +LD+DD  +     + P E+N
Sbjct: 36  FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 243
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 GPFGQIFRPDNFVFGQSG 406
           GP+G +F P  F+F  +G
Sbjct: 157 GPYGTMFLPQQFIFDSNG 174


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 243
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 99  FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLEASMS 266
           F + S I      I    C  +    +W+V+    G+  TGA S  SD  L+ S+S
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD-PLKGSIS 861


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 145 AWMWTISLMIALKIWNPPNRI 83
           AW+W ++LM+    +  PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 160 FPH*PAWMWTISLMIALKIWNPPNR 86
           FP     MWTI L++ L +W+  ++
Sbjct: 25  FPLVSFLMWTIGLIVLLGLWSTQDK 49


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 404 QTVRRRSCPVGRFAQTARNGRSPWFQAQGPPSQLAGRTCPL 282
           Q VRRR+ P+GR     R+ +      +      A   CPL
Sbjct: 148 QVVRRRNVPIGRMPVMLRSNKCV-LSGKNEMEMAALNECPL 187


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 186 VISDEHGIDATGAYSGDSDLQLEA 257
           V SDE    A+G YSGD +L  +A
Sbjct: 234 VYSDEKFFYASGRYSGDVELLCKA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,718
Number of Sequences: 5004
Number of extensions: 36788
Number of successful extensions: 108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)