Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0409
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 116 9e-27
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 114 2e-26
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 114 2e-26
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 112 8e-26
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 111 2e-25
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 109 7e-25
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 109 7e-25
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 106 5e-24
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 106 5e-24
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 64 5e-11
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 64 5e-11
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 64 5e-11
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 64 5e-11
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 64 5e-11
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 64 5e-11
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 62 1e-10
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 48 3e-06
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 48 3e-06
At4g37190.1 68417.m05265 expressed protein 30 0.55
At2g26850.1 68415.m03221 F-box family protein contains Pfam PF00... 29 0.97
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 29 1.3
At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT) id... 27 3.9
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 27 3.9
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat... 27 6.8
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 6.8
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 26 9.0
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 116 bits (278), Expect = 9e-27
Identities = 50/54 (92%), Positives = 54/54 (100%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
INVYYNEASGG+YVPRAV++DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNN
Sbjct: 48 INVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNN 101
Score = 85.4 bits (202), Expect = 1e-17
Identities = 38/46 (82%), Positives = 42/46 (91%), Gaps = 1/46 (2%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD-SDLQLE 254
MREI+HIQ GQCGNQIG+KFWEVI DEHGID+TG YSGD +DLQLE
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLE 46
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 114 bits (275), Expect = 2e-26
Identities = 50/54 (92%), Positives = 54/54 (100%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
INVY+NEASGGKYVPRAV++DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNN
Sbjct: 47 INVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNN 100
Score = 81.8 bits (193), Expect = 2e-16
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
MREI+HIQ GQCGNQIGAKFWEVI EHGID TG GD+DLQLE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLE 45
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 114 bits (275), Expect = 2e-26
Identities = 49/54 (90%), Positives = 54/54 (100%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
INVYYNEASGG+YVPRAV++DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNN
Sbjct: 48 INVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNN 101
Score = 83.8 bits (198), Expect = 4e-17
Identities = 36/46 (78%), Positives = 41/46 (89%), Gaps = 1/46 (2%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS-DLQLE 254
MREI+H+Q GQCGNQIG+KFWEVI DEHG+D TG Y+GDS DLQLE
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLE 46
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 112 bits (270), Expect = 8e-26
Identities = 49/54 (90%), Positives = 54/54 (100%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
I+VY+NEASGGKYVPRAV++DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNN
Sbjct: 47 IDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNN 100
Score = 85.8 bits (203), Expect = 1e-17
Identities = 38/45 (84%), Positives = 39/45 (86%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDS LQLE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLE 45
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 111 bits (266), Expect = 2e-25
Identities = 48/54 (88%), Positives = 53/54 (98%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+NVYYNEAS G+YVPRAV++DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNN
Sbjct: 47 VNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNN 100
Score = 82.6 bits (195), Expect = 1e-16
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
MREI+HIQ GQCGNQIG+KFWEV++ EHGID TG Y GDS+LQLE
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLE 45
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 109 bits (262), Expect = 7e-25
Identities = 47/54 (87%), Positives = 53/54 (98%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+NVYYNEAS G++VPRAV++DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNN
Sbjct: 47 VNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNN 100
Score = 84.2 bits (199), Expect = 3e-17
Identities = 35/45 (77%), Positives = 40/45 (88%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID+TG Y G++DLQLE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLE 45
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 109 bits (262), Expect = 7e-25
Identities = 46/54 (85%), Positives = 53/54 (98%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+NVYYNEAS G+YVPRA+++DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNN
Sbjct: 47 VNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN 100
Score = 85.4 bits (202), Expect = 1e-17
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
MREI+HIQ GQCGNQIG+KFWEV+ DEHGID TG Y G+SDLQLE
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLE 45
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 106 bits (255), Expect = 5e-24
Identities = 46/54 (85%), Positives = 52/54 (96%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
INVYYNEAS G++VPRAV++DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNN
Sbjct: 47 INVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNN 100
Score = 86.6 bits (205), Expect = 6e-18
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y+GDSDLQLE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLE 45
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 106 bits (255), Expect = 5e-24
Identities = 46/54 (85%), Positives = 52/54 (96%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
INVYYNEAS G++VPRAV++DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNN
Sbjct: 47 INVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNN 100
Score = 86.6 bits (205), Expect = 6e-18
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y+GDSDLQLE
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLE 45
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 63.7 bits (148), Expect = 5e-11
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 254 SINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+ N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 48 AFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 239
MREI+ I GQ G Q+G WE+ EHGI G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDT 40
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 63.7 bits (148), Expect = 5e-11
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 254 SINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+ N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 48 AFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 239
MREI+ I GQ G Q+G WE+ EHGI G D+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDT 40
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 63.7 bits (148), Expect = 5e-11
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 254 SINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+ N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 48 AFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Score = 39.9 bits (89), Expect = 7e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 236
MRE + I GQ G Q+G WE+ EHGI G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 63.7 bits (148), Expect = 5e-11
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 254 SINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+ N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 48 AFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Score = 39.9 bits (89), Expect = 7e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 236
MRE + I GQ G Q+G WE+ EHGI G GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 63.7 bits (148), Expect = 5e-11
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 254 SINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+ N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 48 AFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 236
MRE + I GQ G Q+G WE+ EHGI G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD 39
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 63.7 bits (148), Expect = 5e-11
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +2
Query: 254 SINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+ N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 48 AFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD 236
MRE + I GQ G Q+G WE+ EHGI G D
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD 39
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.5 bits (145), Expect = 1e-10
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = +2
Query: 254 SINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 418
+ N +++E S G++VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 48 AFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS 239
MREI+ I GQ G Q+G WE+ EHGI G DS
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDS 40
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 123 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 221
REI+ +Q GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 260 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNN 418
+V++ +A Y+PRA+++DLEP ++ +++G + ++ +N GAGNN
Sbjct: 49 DVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNN 103
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 123 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 221
REI+ +Q GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
Score = 44.4 bits (100), Expect = 3e-05
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 260 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNN 418
+V++ +A Y+PRA+++DLEP ++ +++G + ++ +N GAGNN
Sbjct: 49 DVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNN 103
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.3 bits (65), Expect = 0.55
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFW 182
MREIV IQ G+ N +G+ FW
Sbjct: 1 MREIVTIQVGEFANFVGSHFW 21
>At2g26850.1 68415.m03221 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 371
Score = 29.5 bits (63), Expect = 0.97
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 182 PELCSDLIPALTRLDVDDFPHDCTKNLEPP 93
P+L S ++ ++ LD+ D P DC L PP
Sbjct: 50 PDLASPVLGKMSILDLPDLPLDCILELLPP 79
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 126 EIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLEASMSTI 272
+I++ A + G+ GA FWEVIS + ++G S + L ST+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVIS-----EGMSNFAGPSSIILSDKSSTV 389
>At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT)
identical to SP|Q9LDH0
Length = 534
Score = 27.5 bits (58), Expect = 3.9
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = -1
Query: 281 KLRYSRH*CFKLQVGVAAVSTRGVNAVLVRDYFPE------LCSDLIPALTRLDVDDFPH 120
+L + RH F G +AVS R VN ++ +Y E DL+ ++ +D +DF
Sbjct: 171 RLGFKRHRRFGGGEGGSAVSRRLVNDEMLNEYMQEGGIDRHTMRDLVASIRAVDTNDFV- 229
Query: 119 DCTKNLEPP 93
C + +E P
Sbjct: 230 -CEEWVEEP 237
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 411 PAPDCPKTKLSGRKICPNGPERTESMVPG-SRSTITARGT 295
PAP P L ICP+G + M SRS + GT
Sbjct: 129 PAPTSPANVLPTGNICPSGKIQITGMTQSRSRSDVLGSGT 168
>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative strong
similarity to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 995
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 142 RRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPTCSLKHQCLL*RSFRGQVRPASCDGGP 321
RR +G+RS + S + A + +A SL++Q +SF +R
Sbjct: 3 RRATSGVRSASARLSSSLSRIASSETASVSAPSASSLRNQTNRSKSFSSALRSFRVCSAS 62
Query: 322 *AWNHG 339
W+HG
Sbjct: 63 TRWSHG 68
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 141 QAGQCGNQIGAKFWEVISDEHGIDATGAYSG 233
QA G IG ++W +IS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 416 YSPPQTVRRRSCPVGRFAQTARNGRSPWFQAQGPPSQL 303
Y PPQ + + +G TA N P+ + PPS L
Sbjct: 61 YGPPQYHHQHASNLGSGMSTAPNFYVPYVNYEAPPSFL 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,184,546
Number of Sequences: 28952
Number of extensions: 214635
Number of successful extensions: 574
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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