Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0404
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    44   1e-05
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    43   2e-05
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    29   0.31 
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    28   0.53 
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   2.9  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   3.8  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    25   6.6  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
 Frame = +1

Query: 262 LLSVAYKNVVGXRRSXGVSFPQLNRKTRVQKGNSXW----QRYRVKVXKELXEICYDVL 426
           LLSVAYKN++G RR+       + +K    +GN+      + YR K+  EL +IC+DVL
Sbjct: 45  LLSVAYKNIIGARRASWRIISSIEQKEE-SRGNTRQAALIKEYRKKIEDELSDICHDVL 102



 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 21/41 (51%), Positives = 27/41 (65%)
 Frame = +2

Query: 131 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS E
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVE 41


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = +1

Query: 262 LLSVAYKNVVGXRRSXGVSFPQLNRKTRVQKGNSXW----QRYRVKVXKELXEICYDVL 426
           LLSVAYKNV+G RR+       + +K    KGN+      + YR K+ +EL  IC D+L
Sbjct: 46  LLSVAYKNVIGARRASWRIVSSIEQKEE-SKGNTAQVELIKEYRQKIEQELDTICQDIL 103



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +2

Query: 134 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ E
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVE 42


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 146 EELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEGGTSFQL 274
           ++LV R K  E  ERY  +   ++++ E  +++ +EGG+  QL
Sbjct: 40  QKLVTREKEQETLERYAVILRDVEKLIEAHIQIVSEGGSYSQL 82


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +3

Query: 24  FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 188
           FS +E  ILC     L+L+V  +    ++  S+ + F +PR     K   N   WPN+ S
Sbjct: 39  FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98

Query: 189 DM 194
            +
Sbjct: 99  HL 100


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 36  EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 173
           EKL+ C       HF    +G+ +  L    RC +T    CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 78  FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 200
           FSP +K  + +L LFH  + PS+++    V N  +  SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 334 RKTRVQKGNSXWQRYRVKVXKELXEI 411
           RKT   +G+  W+ Y +++ K L ++
Sbjct: 66  RKTPNGEGSKTWETYEMRIHKRLIDL 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,778
Number of Sequences: 5004
Number of extensions: 26385
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)