Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0404
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 44 5e-05
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 39 0.002
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 38 0.003
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 38 0.003
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 38 0.003
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 38 0.005
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 36 0.014
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 35 0.032
11_08_0071 + 28153043-28153555 31 0.39
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 28 3.7
03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228 28 3.7
02_05_0552 - 29911280-29912541,29912633-29912762 28 3.7
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 27 4.9
02_05_0797 - 31805956-31806902,31806992-31807505 27 4.9
06_01_0923 + 7129891-7130211,7130610-7131068 27 8.5
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 44.0 bits (99), Expect = 5e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +2
Query: 140 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNE 253
++E++V+ AKLAEQAERYDDM MK + V++S E
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAE 40
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 122 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 232
S+ + +EE V AKLAEQAERY++M M++V +T
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEKVAKT 38
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 262 LLSVAYKNVVGXRRSXGVSFPQLNRKTRVQKGN----SXWQRYRVKVXKELXEICYDVL 426
LLSVAYKNV+G RR+ + +K +GN + + YR K+ EL +IC +L
Sbjct: 51 LLSVAYKNVIGARRASWRIISSIEQKEE-SRGNEDRVTLIKDYRGKIETELTKICDGIL 108
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 262 LLSVAYKNVVGXRRSXG--VSFPQLNRKTRVQKGNSXWQR-YRVKVXKELXEICYDVL 426
LLSVAYKNV+G RR+ VS + + R G++ R YR +V EL IC +L
Sbjct: 55 LLSVAYKNVIGARRASWRIVSSIEQKEEGRGAAGHAAAARSYRARVEAELSNICAGIL 112
Score = 36.7 bits (81), Expect = 0.008
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 143 KEELVQRAKLAEQAERYDDMAAAMKEV 223
+EE+V AKLAEQAERY++M M++V
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKV 36
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 262 LLSVAYKNVVGXRRSXGVSFPQLNRKTRVQKGNSXW----QRYRVKVXKELXEICYDVL 426
LLSVAYKNV+G RR+ + +K +GN + + YR ++ EL +IC +L
Sbjct: 50 LLSVAYKNVIGARRASWRIISSIEQKEE-SRGNEAYVASIKEYRSRIETELSKICDGIL 107
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 125 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 232
S +EE V AKLAEQAERY++M M++V +T
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKT 37
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 122 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 232
S + +EE V AKLAEQAERY++M M++V +T
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEKVAKT 256
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 262 LLSVAYKNVVGXRRSXGVSFPQLNRKTRVQKGN----SXWQRYRVKVXKELXEICYDVL 426
LLSVAYKNV+G RR+ + +K +GN + + YR K+ EL +IC +L
Sbjct: 269 LLSVAYKNVIGARRASWRIISSIEQKEE-SRGNEDRCTLIKEYRGKIETELSKICDGIL 326
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 137 VDKEELVQRAKLAEQAERYDDMAAAMKEVTET 232
+ +EE V AKLAEQAERY++M M++V +T
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEKVAKT 32
Score = 36.3 bits (80), Expect = 0.010
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 262 LLSVAYKNVVGXRRSXGVSFPQLNRKTRVQKGN----SXWQRYRVKVXKELXEICYDVL 426
LLSVAYKNV+G RR+ + +K +GN + + YR K+ EL +IC +L
Sbjct: 45 LLSVAYKNVIGARRASWRIVSSIEQKEE-GRGNEEHVTLIKEYRGKIEAELSKICDGIL 102
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 35.9 bits (79), Expect = 0.014
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 262 LLSVAYKNVVGXRRSXGVSFPQLNRKTRVQKGN----SXWQRYRVKVXKELXEICYDVL 426
LLSVAYKNV+G RR+ + +K +GN + + YR K+ EL IC +L
Sbjct: 28 LLSVAYKNVIGARRASWRIISSIEQKEE-GRGNDAHAATIRSYRGKIEAELARICDGIL 85
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 34.7 bits (76), Expect = 0.032
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +1
Query: 262 LLSVAYKNVVGXRRSXG--VSFPQLNRKTRVQKGN-SXWQRYRVKVXKELXEICYDVL 426
LLSV YKN++G +R+ + +L +T+ ++ + YR KV E+ +IC DV+
Sbjct: 22 LLSVGYKNLIGAKRAAMRIIGSIELKEETKGKESHVRQTAEYRRKVEAEMDKICCDVI 79
>11_08_0071 + 28153043-28153555
Length = 170
Score = 31.1 bits (67), Expect = 0.39
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 127 GRWKRTNSLMPLSEGEKCI*TSKFKHNISFSLALNDILVLT 5
G W R N+ PL + + H++S S++L +ILV T
Sbjct: 130 GTWLRANTSCPLCRADTTPSSGDLHHHLSISVSLEEILVRT 170
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 265 GGSSLVAKFDAGFRHFLH-RGRHVVISLSLFGQ 170
GGS++ +KFD+G + LH G+ + S+ FG+
Sbjct: 243 GGSTIHSKFDSGKQKILHIFGKTSIPSVKFFGE 275
>03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228
Length = 628
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 140 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEGGTSFQLLIRMS 289
D ++++ A+L EQA D A +++EV + GT FQL S
Sbjct: 140 DMKDVLLHARLVEQAAGEDQPAVSIEEVPGSNGRGGANEGTVFQLTFACS 189
>02_05_0552 - 29911280-29912541,29912633-29912762
Length = 463
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 68 SNTFFPFRQGHQ*ISPLPSSTMSVDKEELVQRAKL-AEQAERYDDMAAAM 214
S T H SP+PSS +EEL++R +L AE +R M AA+
Sbjct: 50 SGTTVALNHRHGPCSPVPSSKKRPTEEELLKRDQLRAEHIQRKFAMNAAV 99
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 286 VVGXRRSXGVSFPQLNRKTRVQKGNSXWQRYRVKVXKELXEI 411
+VG S + + NRK R QKG+S + ++K E+ ++
Sbjct: 597 LVGAGSSGPSTHEKKNRKKRAQKGDSDVEAKKLKTASEIDDV 638
>02_05_0797 - 31805956-31806902,31806992-31807505
Length = 486
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 137 VDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEGGTS 265
V +EE+ + + A E+ DM A E V + EGGTS
Sbjct: 425 VKREEVARLVQEAMDGEKSKDMRAKAMAWKEKAVAATEEGGTS 467
>06_01_0923 + 7129891-7130211,7130610-7131068
Length = 259
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 170 LAEQAERYDDMAAAMKEVTETGVELSNEGGTSFQLLIR 283
+ E+ + D + + TE G +++ GG +FQ + R
Sbjct: 216 IPEEETKADPVVKLLSTATEEGQKVARNGGQTFQAIFR 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,045,238
Number of Sequences: 37544
Number of extensions: 184457
Number of successful extensions: 535
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -