Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0402
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 159 7e-40
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 56 4e-11
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 53 1e-07
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 37 0.006
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 36 0.014
02_04_0651 - 24737953-24738114,24738205-24738375,24738534-247386... 27 5.0
04_04_0484 - 25570798-25570964,25572641-25572679,25572718-255728... 27 6.6
02_04_0646 + 24710348-24711838 27 6.6
11_04_0403 + 17298498-17298713,17298799-17299696,17299874-173005... 27 8.7
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 159 bits (387), Expect = 7e-40
Identities = 70/86 (81%), Positives = 78/86 (90%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
R+FLD + FLEVETP+MN + GGA A+PF+THHNELNM LYMRIAPELY K LVVGGLDR
Sbjct: 282 RKFLDGLDFLEVETPMMNMIAGGAAARPFVTHHNELNMRLYMRIAPELYLKELVVGGLDR 341
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
VYEIG+QFRNEGIDLTHNPEFTTC+F
Sbjct: 342 VYEIGKQFRNEGIDLTHNPEFTTCEF 367
Score = 63.7 bits (148), Expect = 6e-11
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPXGKEIE 389
FYMAYADYNDL+ +TE++LSGMV+ + G YK+KYH G IE
Sbjct: 367 FYMAYADYNDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPIE 411
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 56.0 bits (129), Expect(2) = 4e-11
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = +1
Query: 160 VVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCD 255
VVGGL++VYEIGR FRNEGI HNPEFTT +
Sbjct: 299 VVGGLEKVYEIGRIFRNEGISTRHNPEFTTIE 330
Score = 33.1 bits (72), Expect = 0.10
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 258 YMAYADYNDLMTITESILSGMVQSIHGSYKVKY 356
Y AY+DY +M + E I++ + HG +V Y
Sbjct: 332 YEAYSDYESMMNLAEEIVTRCAMATHGKLRVDY 364
Score = 28.3 bits (60), Expect(2) = 4e-11
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPG 66
R+ +++ GF+EVETP++ V G
Sbjct: 281 RKTMESFGFIEVETPVLQVVGG 302
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 52.8 bits (121), Expect = 1e-07
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RRFL-DNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLD 177
RR+L D F+E+ETP+++ + + M + +P+L+ +ML+V G +
Sbjct: 242 RRYLEDRHDFVEIETPVLSKSTPEGARDYLVPSRVQPGMFYALPQSPQLFKQMLMVSGFE 301
Query: 178 RVYEIGRQFRNEGIDLTHNPEFTTCD 255
+ Y+I R FR+E + PEFT D
Sbjct: 302 KYYQIARCFRDEDLRADRQPEFTQLD 327
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 37.1 bits (82), Expect = 0.006
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
R+ L + GF+ + TP + A F +N + +P+L+ +M + GG +R
Sbjct: 214 RQVLLSEGFVGIHTPKLIGGSSEGGAAVFKLDYN--GQPACLAQSPQLHKQMAICGGFER 271
Query: 181 VYEIGRQFRNEGIDL-THNPEFTTCD 255
V+E+G FR E + H EF D
Sbjct: 272 VFEVGPVFRAEDSNTHRHLCEFVGLD 297
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 35.9 bits (79), Expect = 0.014
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 133 APELYHKMLVVGGLDRVYEIGRQFRNEGIDL-THNPEFTTCD 255
+P+LY +M + GG +RV+E+G FR E + H EF D
Sbjct: 297 SPQLYKQMAICGGFERVFEVGPVFRAENSNTHRHLCEFVGLD 338
>02_04_0651 -
24737953-24738114,24738205-24738375,24738534-24738632,
24738738-24738938,24739234-24739341,24739531-24739810,
24739962-24740089
Length = 382
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +1
Query: 94 HHNEL--NMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCDFTWH 267
HH + N L+M +Y+ M D +YE + E DL H T +H
Sbjct: 48 HHTQFRTNYSLFMPFYDYIYNTM--DKSSDELYESSLKGTEETPDLVHLTHMTNLQSAYH 105
Query: 268 MRI 276
+RI
Sbjct: 106 LRI 108
>04_04_0484 -
25570798-25570964,25572641-25572679,25572718-25572869,
25572975-25573090,25573196-25573363,25574202-25574300,
25574450-25574650,25575369-25575689
Length = 420
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 175 DRVYEIGRQFRNEGIDLTHNPEFTTCDFTWHMRIIMT**PLLNQSC--LVWYRAFMDP 342
D +YE + E D+ H T+ T+H+RI +T + ++ C VWY + P
Sbjct: 6 DELYERSLKGTEETPDIVHLTHMTSLKSTYHLRIGIT--SISSKPCNDSVWYMWMLWP 61
>02_04_0646 + 24710348-24711838
Length = 496
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 300 ESILSGMVQSIHGSYKVKYHPEGPXGKEIESI 395
E ++GM Q+ HG + YH + GK S+
Sbjct: 444 EDEMAGMDQTRHGGFAYAYHDDDASGKPDRSV 475
>11_04_0403 +
17298498-17298713,17298799-17299696,17299874-17300592,
17301714-17301806,17301884-17302051
Length = 697
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 70 ATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDL 225
A A P T++ E D Y ++ P++ H+ +D + E G + +DL
Sbjct: 402 AIAIPGRTYNEEFIPDAYTKVQPQVVHEGFESYDIDFLTEDGVSVLGDAVDL 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,480
Number of Sequences: 37544
Number of extensions: 237070
Number of successful extensions: 449
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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