Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0402
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   4e-39
SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.)             125   1e-29
SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.005
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)           33   0.078
SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_25278| Best HMM Match : wnt (HMM E-Value=8.9e-18)                   27   8.9  

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score =  157 bits (381), Expect = 4e-39
 Identities = 67/76 (88%), Positives = 74/76 (97%)
 Frame = +1

Query: 31  EVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRN 210
           +VETPLMN +PGGATAKPFITHHN+LNMDL+MR+APELYHKMLVVGG+DRVYEIGRQFRN
Sbjct: 758 KVETPLMNMIPGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGIDRVYEIGRQFRN 817

Query: 211 EGIDLTHNPEFTTCDF 258
           E IDLTHNPEFTTC+F
Sbjct: 818 ESIDLTHNPEFTTCEF 833



 Score = 66.5 bits (155), Expect = 9e-12
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +3

Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPE 365
           FYMAYADYNDLM ITE+++SGMV++I G YKV YHPE
Sbjct: 833 FYMAYADYNDLMEITETMISGMVKNITGGYKVTYHPE 869


>SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score =  125 bits (302), Expect = 1e-29
 Identities = 54/60 (90%), Positives = 59/60 (98%)
 Frame = +1

Query: 34  VETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNE 213
           VETPLMN +PGGATAKPFITHHN+LNMDL+MR+APELYHKMLVVGG+DRVYEIGRQFRNE
Sbjct: 1   VETPLMNMIPGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGIDRVYEIGRQFRNE 60


>SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 258 YMAYADYNDLMTITESILSGMVQSIHGS-YKVKYHPEG 368
           YMAYADY+DL+ +TES+   + Q + G+ Y+ +    G
Sbjct: 100 YMAYADYHDLIELTESLFRTLAQEVLGTGYRARIRNHG 137


>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
          Length = 479

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 121 YMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDL-THNPEFTTCD 255
           ++  +P+LY +M + G  D+VY IG  FR E  +   H  EF   D
Sbjct: 252 FLAQSPQLYKQMALTGDFDKVYTIGSVFRAEDSNTHRHLTEFIGLD 297


>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 178 RVYEIGRQFRNEGIDLTHNPEF 243
           + + I R FRNE +D TH  EF
Sbjct: 251 KFFSIDRVFRNETLDATHLAEF 272


>SB_25278| Best HMM Match : wnt (HMM E-Value=8.9e-18)
          Length = 167

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 266 CHVKSQVVNSGLCVKSIPSFR 204
           CH  S   N+  C KS+PSFR
Sbjct: 12  CHGPSGSCNTKTCWKSVPSFR 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,216
Number of Sequences: 59808
Number of extensions: 284419
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)