Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0402
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 167 2e-42
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 167 2e-42
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 167 2e-42
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 57 6e-09
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 45 2e-05
AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical ... 32 0.16
U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical pr... 29 1.1
AC084197-6|AAO38572.1| 328|Caenorhabditis elegans Serpentine re... 29 1.1
Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl ... 28 3.4
AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl ... 28 3.4
U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical pr... 27 4.5
AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical... 27 4.5
AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical... 27 4.5
AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial... 27 4.5
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 27 7.9
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 167 bits (407), Expect = 2e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
RR+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DR
Sbjct: 176 RRYLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDR 235
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
VYE+GR FRNEGIDLTHNPEFTTC+F
Sbjct: 236 VYEVGRLFRNEGIDLTHNPEFTTCEF 261
Score = 66.1 bits (154), Expect = 1e-11
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPXGKEIESISXHP 407
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + + P
Sbjct: 261 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTP 311
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 167 bits (407), Expect = 2e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
RR+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DR
Sbjct: 258 RRYLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDR 317
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
VYE+GR FRNEGIDLTHNPEFTTC+F
Sbjct: 318 VYEVGRLFRNEGIDLTHNPEFTTCEF 343
Score = 66.1 bits (154), Expect = 1e-11
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPXGKEIESISXHP 407
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + + P
Sbjct: 343 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTP 393
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 167 bits (407), Expect = 2e-42
Identities = 70/86 (81%), Positives = 83/86 (96%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
RR+LDN+GFLEVETP+MN + GGATAKPFITHHN+L+M+L++R+APELYHKMLVVGG+DR
Sbjct: 234 RRYLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDR 293
Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
VYE+GR FRNEGIDLTHNPEFTTC+F
Sbjct: 294 VYEVGRLFRNEGIDLTHNPEFTTCEF 319
Score = 66.1 bits (154), Expect = 1e-11
Identities = 26/51 (50%), Positives = 36/51 (70%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPXGKEIESISXHP 407
FYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + + P
Sbjct: 319 FYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTP 369
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 56.8 bits (131), Expect = 6e-09
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 RRFL-DNMGFLEVETP-LMNXVPGGATAKPFITHHNELNMDLYMRI--APELYHKMLVVG 168
RRFL + GF++VETP L PGGA F+ N L + +P+ + ++L+VG
Sbjct: 167 RRFLVEKSGFVDVETPTLFRRTPGGAAE--FVVPAPSPNQGLAYSLPQSPQQFKQLLMVG 224
Query: 169 GLDRVYEIGRQFRNEGIDLTHNPEFTTCD 255
+DR ++I R +R+EG PEFT D
Sbjct: 225 AIDRYFQIARCYRDEGSKGDRQPEFTQVD 253
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 45.2 bits (102), Expect = 2e-05
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 1 RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
R LD GF+E+ P + P A F + Y+ +P+LY +M + G ++
Sbjct: 237 RNILDVRGFVEIMAPKIISAPSEGGANVFEVSY--FKGSAYLAQSPQLYKQMAIAGDFEK 294
Query: 181 VYEIGRQFRNEGIDL-THNPEFTTCD----FTWHMRIIM 282
VY IG FR E + H EF D F +H +M
Sbjct: 295 VYTIGPVFRAEDSNTHRHMTEFVGLDLEMAFNFHYHEVM 333
>AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical
protein Y32F6A.6 protein.
Length = 261
Score = 32.3 bits (70), Expect = 0.16
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 4 RFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRV 183
++L + FLE +MN + A +N+D ELY++MLV G++RV
Sbjct: 102 KYLYQLLFLETNRVIMNPI-----ALESFNKRQSINIDYVYSKMTELYNRMLVTQGIERV 156
Query: 184 YEIGRQ 201
++ Q
Sbjct: 157 FKWNSQ 162
>U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical
protein F10E7.9 protein.
Length = 574
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -3
Query: 125 MYKSMFNSL**VMNGLAVAPPGTIFISGVSTSRK 24
M+K++F+SL + +G P T F SGVS+S++
Sbjct: 517 MFKTVFSSLDSLRSGATTILPETTFTSGVSSSQQ 550
>AC084197-6|AAO38572.1| 328|Caenorhabditis elegans Serpentine
receptor, class v protein25 protein.
Length = 328
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPXGKEIESISXHPLL 413
+Y+A A YN + SG+V Y+V HP P +I+++S L+
Sbjct: 89 YYIAAAAYNHIYYTLYIRCSGIVFLSFQRYQVITHPHSPLTNKIQTLSKFKLI 141
>Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical
protein ZC482.4 protein.
Length = 550
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 46 LMNXVPGGATAKPFITHHNELNMDLYMRIAPELYH--KMLVVGGLDRVYEIGRQFRNEGI 219
++N V GG +H +L + P LY + +GG GR ++NE I
Sbjct: 425 VINLVTGGERIAIIQDNHPDLFKSRECDLFPYLYTFVNLTYIGG-----NCGRSYQNEDI 479
Query: 220 DLTHNPEFTTCDF 258
D+ + E+T +F
Sbjct: 480 DVYNGQEYTLVNF 492
>AF000263-6|AAO21394.1| 496|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform b protein.
Length = 496
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 178 RVYEIGRQFRNEGIDLTHNPEF 243
+++ I R FRNE +D TH EF
Sbjct: 348 KLFSIDRVFRNETLDATHLAEF 369
>AF000263-5|AAG00015.1| 552|Caenorhabditis elegans Phenylalanyl (f)
trna synthetaseprotein 1, isoform a protein.
Length = 552
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 178 RVYEIGRQFRNEGIDLTHNPEF 243
+++ I R FRNE +D TH EF
Sbjct: 404 KLFSIDRVFRNETLDATHLAEF 425
>U58726-3|AAB00577.1| 357|Caenorhabditis elegans Hypothetical
protein T01C8.4 protein.
Length = 357
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 301 NQSCLVWYRAFMDPTRSNIIQKDQXVRK*NRF 396
N CL + MDPTR IQ Q +++ N F
Sbjct: 132 NPCCLCYNPTGMDPTREQWIQMAQVIKQKNLF 163
>AL132943-13|CAC14396.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 106 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 243
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
>AL117207-24|CAB60398.3| 458|Caenorhabditis elegans Hypothetical
protein Y60A3A.13 protein.
Length = 458
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 106 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 243
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
>AB096637-1|BAC76737.1| 458|Caenorhabditis elegans mitochondrial
phenylalanyl-tRNAsynthetase protein.
Length = 458
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 106 LNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEF 243
+N + +R + L+ GLD IG +R + +D TH P F
Sbjct: 145 VNHEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCF 190
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 43 PLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYH 150
P M+ P F+ HH LN L+ P YH
Sbjct: 629 PPMSCPPSNYGQSNFLFHHQHLNQHLHHSQPPHPYH 664
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,688,559
Number of Sequences: 27780
Number of extensions: 211258
Number of successful extensions: 447
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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