Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0402
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin...   158   2e-39
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f...   114   3e-26
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f...    57   5e-09
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    42   2e-04
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as...    31   0.26 
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as...    31   0.26 
At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    27   5.5  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    27   5.5  
At5g19290.1 68418.m02299 esterase/lipase/thioesterase family pro...    27   7.3  
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A...    26   9.7  

>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
           lysine--tRNA ligase, putative similar to SP|Q43776
           Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 626

 Score =  158 bits (383), Expect = 2e-39
 Identities = 68/86 (79%), Positives = 78/86 (90%)
 Frame = +1

Query: 1   RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
           RRFLDN  FLEVETP+MN + GGA A+PF+THHN+L+M LYMRIAPELY K L+VGGL+R
Sbjct: 291 RRFLDNKNFLEVETPMMNMIAGGAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLER 350

Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCDF 258
           VYEIG+QFRNEGIDLTHNPEFTTC+F
Sbjct: 351 VYEIGKQFRNEGIDLTHNPEFTTCEF 376



 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +3

Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPXGKEIE 389
           FYMA+ADYNDLM +TE +LSGMV+ + G YK+KY+  G     IE
Sbjct: 376 FYMAFADYNDLMEMTEVMLSGMVKELTGGYKIKYNANGYDKDPIE 420



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 389 IDFXPPFARVPMMATLE 439
           IDF PPF R+ M+  LE
Sbjct: 421 IDFTPPFRRIEMIGELE 437


>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
           family protein similar to SP|Q9RHV9 Lysyl-tRNA
           synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
           stearothermophilus}; contains Pfam profile: PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 602

 Score =  114 bits (274), Expect = 3e-26
 Identities = 49/85 (57%), Positives = 65/85 (76%)
 Frame = +1

Query: 1   RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
           R+ +++ G+LEVETP++    GGA A+PF+T HN L  DLY+RIA EL+ K ++VGG ++
Sbjct: 263 RKTVESFGYLEVETPVLQGAAGGAEARPFVTFHNSLGRDLYLRIATELHLKRMLVGGFEK 322

Query: 181 VYEIGRQFRNEGIDLTHNPEFTTCD 255
           VYEIGR FRNEGI   HNPEFTT +
Sbjct: 323 VYEIGRIFRNEGISTRHNPEFTTIE 347



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 258 YMAYADYNDLMTITESILSGMVQSIHGSYKVKY 356
           Y AY+DY+ +M + E I++    +++G   + Y
Sbjct: 349 YEAYSDYHSMMDMAELIVTQCSMAVNGKLTIDY 381


>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
           family protein similar to SP|P36419 Aspartyl-tRNA
           synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
           (AspRS) {Thermus thermophilus}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 664

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   RRFL-DNMGFLEVETPLMNX-VPGGATAKPFITHHNELNMDLY-MRIAPELYHKMLVVGG 171
           RR+L D  GF+E+ETP+++   P GA  + ++      +   Y +  +P+L+ +ML+V G
Sbjct: 230 RRYLEDRHGFIEIETPILSRSTPEGA--RDYLVPSRIQSGTFYALPQSPQLFKQMLMVSG 287

Query: 172 LDRVYEIGRQFRNEGIDLTHNPEFTTCD 255
            D+ Y+I R FR+E +     PEFT  D
Sbjct: 288 FDKYYQIARCFRDEDLRADRQPEFTQLD 315


>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +1

Query: 1   RRFLDNMGFLEVETPLMNXVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDR 180
           R +L + GFLE+ TP +  + G +     +   +       +  +P+L+ +M + G + R
Sbjct: 238 REYLQSKGFLEIHTPKL--IAGSSEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDMRR 295

Query: 181 VYEIGRQFRNE-GIDLTHNPEFTTCDFTWHMRI 276
           V+E+G  FR E      H  EF   D    +R+
Sbjct: 296 VFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRM 328


>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 133 APELYHKMLVVGGLDRVYEIGRQFRNE-GIDLTHNPEFTTCDFTWHMR 273
           +P+L+ +M + G L RV+E+G  FR E      H  EF   D    +R
Sbjct: 306 SPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIR 353


>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 133 APELYHKMLVVGGLDRVYEIGRQFRNE-GIDLTHNPEFTTCDFTWHMR 273
           +P+L+ +M + G L RV+E+G  FR E      H  EF   D    +R
Sbjct: 306 SPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIR 353


>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 94  HHNEL--NMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCDFTWH 267
           HH +   N  L+M +   +Y  M      D +YE   +  ++ +D+ H    TT +  +H
Sbjct: 251 HHTQFRTNYSLFMPLYDYIYGTM--DESTDTLYEKTLERGDDIVDVVHLTHLTTPESIYH 308

Query: 268 MRI 276
           +RI
Sbjct: 309 LRI 311


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 94  HHNEL--NMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCDFTWH 267
           HH +   N  L+M +   +Y  M      D +YE   +  ++ +D+ H    TT +  +H
Sbjct: 251 HHTQFRTNYSLFMPLYDYIYGTM--DESTDTLYEKTLERGDDIVDVVHLTHLTTPESIYH 308

Query: 268 MRI 276
           +RI
Sbjct: 309 LRI 311


>At5g19290.1 68418.m02299 esterase/lipase/thioesterase family
           protein low similarity to monoglyceride lipase [Homo
           sapiens] GI:14594904; contains Interpro entry IPR000379
          Length = 330

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +1

Query: 25  FLEVETPLMNXVPGGATAKPFIT----HHNELNMDLYMRIAPELYHKML 159
           F EVE PL+    GG            H   ++ D  ++I PEL+H+M+
Sbjct: 247 FEEVEVPLLIVHGGGDVVCDVACVEELHRRAISEDKTIKIYPELWHQMI 295


>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
           (PP2A) 65 kDa regulatory subunit, putative similar to
           protein phosphatase 2A 65 kDa regulatory subunit
           GI:683502 from [Arabidopsis thaliana]
          Length = 587

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 82  PFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVY 186
           PF++ +N+ + ++ + +A EL   +L VGG++  Y
Sbjct: 51  PFLSENNDDDDEVLLAMAEELGGFILYVGGVEYAY 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,108,982
Number of Sequences: 28952
Number of extensions: 194925
Number of successful extensions: 440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)