Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0401
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    24   5.2  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    24   6.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   6.8  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    24   6.8  
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    23   9.0  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       23   9.0  

>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 268 REKDICAKLFFH*LLRIQ 215
           + ++ICAKL FH  LR++
Sbjct: 29  KAEEICAKLSFHNTLRVR 46


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 148  FS*IDTKINVHYDRAWWWSQKR 213
            +S +D    V YDR  WW+ ++
Sbjct: 947  YSLLDFLRTVSYDRGAWWASRK 968


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 160  RFMKTNLI*SKMIKLIQTQYMKYIY 86
            RF+K + + S   K+++ Q M YIY
Sbjct: 2709 RFLKDSWLSSNQQKMLKNQGMAYIY 2733


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 275 PRARKRHLRETFFSLVAQDPVLFWLHHHA 189
           P   K HL   +F+ +AQ  +L   H  A
Sbjct: 288 PEISKEHLNGAYFTAIAQRGILHRAHDDA 316


>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 281 KRPRARKRHLRETFFSLVAQDPVLFWLHHH 192
           K P+ RK  L   +  L+ + P    L H+
Sbjct: 15  KNPQLRKSFLHSNYVQLIQESPNFLILQHN 44


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +1

Query: 274 GRLVMANAHWLIE-DSEN 324
           GRL+M   HWL E D EN
Sbjct: 155 GRLLMLLKHWLFERDLEN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,674
Number of Sequences: 5004
Number of extensions: 18736
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)