Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0401
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0207 + 23272777-23272977,23273831-23275330                       27   2.7  
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     26   6.2  
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...    26   8.3  
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...    26   8.3  

>05_05_0207 + 23272777-23272977,23273831-23275330
          Length = 566

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 182 MTGRGGGAKKELDPEQLMKKKFRA 253
           + G+GGGAKK++   Q++ +K+ A
Sbjct: 478 VAGKGGGAKKKVSLGQILSQKYDA 501


>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 278 RPRARKRHLRETFF 237
           RPR R+R LRET+F
Sbjct: 711 RPRRRRRSLRETYF 724


>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 232 NEKKVSRKCLFRALGRLVMANAHWLIEDS 318
           N++ V+ +   R LG L + N++W+ EDS
Sbjct: 202 NKRSVAEERAGRKLGGLRVLNSYWVNEDS 230


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 232 NEKKVSRKCLFRALGRLVMANAHWLIEDS 318
           N++ V+ +   R LG L + N++W+ EDS
Sbjct: 97  NKRSVAEERAGRKLGGLRVLNSYWVNEDS 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,024,072
Number of Sequences: 37544
Number of extensions: 112032
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)