Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0401
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    28   1.7  
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...    28   1.7  
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)            25   9.3  
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)            25   9.3  
At3g22640.1 68416.m02858 cupin family protein contains similarit...    25   9.3  
At2g45590.1 68415.m05669 protein kinase family protein contains ...    25   9.3  

>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 188 GRGGGAKKELDPEQLMKKKFRANVFF 265
           GRGG +K+ELD   L K+ F   V F
Sbjct: 100 GRGGSSKRELDSVSLPKQNFGNLVHF 125


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 188 GRGGGAKKELDPEQLMKKKFRANVFF 265
           GRGG +K+ELD   L K+ F   V F
Sbjct: 100 GRGGSSKRELDSVSLPKQNFGNLVHF 125


>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 232 NEKKVSRKCLFRALGRLVMANAHWLIEDS 318
           +++ V+ +   R LG L + N++WL EDS
Sbjct: 97  SKRSVAEERAGRKLGGLRVVNSYWLNEDS 125


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 232 NEKKVSRKCLFRALGRLVMANAHWLIEDS 318
           +++ V+ +   R LG L + N++WL EDS
Sbjct: 97  SKRSVAEERAGRKLGGLRVVNSYWLNEDS 125


>At3g22640.1 68416.m02858 cupin family protein contains similarity
           to vicilin-like protein precursor [Juglans regia]
           GI:6580762, vicilin precursor [Theobroma cacao]
           PIR|S22477, vicilin precursor [Macadamia integrifolia]
           GI:5852872
          Length = 486

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 284 TKRPRARKRHLRETFFSLVAQDPVLFWLHHH 192
           TK   A  R +    FSLV  +P  F++ HH
Sbjct: 89  TKHAPALFRGIENYRFSLVEMEPTTFFVPHH 119


>At2g45590.1 68415.m05669 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 683

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 163 TKINVHYDRAWWWSQKRTG 219
           +K+ V   R WWW Q   G
Sbjct: 362 SKLKVGSKRDWWWKQDNNG 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,849,374
Number of Sequences: 28952
Number of extensions: 94252
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)