Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0400
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0475 - 3818121-3820565                                           27   3.1  
02_02_0640 - 12528075-12528363,12531326-12532311                       27   4.0  
02_01_0750 + 5574707-5576017                                           27   4.0  
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468...    27   5.3  

>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 LKMDMXNPPNQSYWFVLREDQSNVILS-TNNFVNQNPQ 232
           + +   NPPN  YW    E  S+ ++S  N  +N NP+
Sbjct: 209 IDLSRSNPPNM-YWSWSSEKSSSALISLLNQLININPE 245


>02_02_0640 - 12528075-12528363,12531326-12532311
          Length = 424

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 202 TKYHIALIFSKYKPIALIWRVVHIH 128
           +K  +AL F  Y P A +WRV+  H
Sbjct: 381 SKKRLALEFQVYNPAAKMWRVLTTH 405


>02_01_0750 + 5574707-5576017
          Length = 436

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 345 FFWWLAIMFLYDYRRFIYVDKLSIFSCFYYDLVS 244
           FF + + +FL   +RFIY+D L    C Y D+ S
Sbjct: 305 FFMYKSKLFLGSQKRFIYIDILDGTVC-YVDIPS 337


>03_05_0603 -
           26046145-26046273,26046400-26046459,26046820-26046895,
           26046988-26047109,26047286-26047360,26047466-26047536,
           26048102-26048129,26048625-26048738
          Length = 224

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 346 LFLVVGYHVLVRLSEVHLCG*IVYFLXFLLRSCLLKWNLGILINKIIGTK 197
           LF+ V YH+ +  S+V       Y+L F++ S L   N    +  + G K
Sbjct: 168 LFIYVFYHIYLHYSQVMQMHAFGYYLTFIVPSVLFVMNTMWFMKILKGVK 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,328,189
Number of Sequences: 37544
Number of extensions: 140612
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)