BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0400 (349 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41042| Best HMM Match : Recep_L_domain (HMM E-Value=6.8) 26 7.3 SB_54846| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3 SB_19323| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3 SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31) 26 7.3 >SB_41042| Best HMM Match : Recep_L_domain (HMM E-Value=6.8) Length = 215 Score = 26.2 bits (55), Expect = 7.3 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = -2 Query: 141 LXISIFNEKYLNNYKYLHDSVLKNRRIVFSMXTL 40 L +SI E+ +NN YLHD V R IV TL Sbjct: 48 LAVSIRGERQINNSFYLHD-VSTLREIVLVNLTL 80 >SB_54846| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 159 Score = 26.2 bits (55), Expect = 7.3 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -1 Query: 232 LGILINKIIGTKYHIALIFSKY-KPIALIWRVVH 134 LG+LI+K + KYHI I +K + + LI ++ H Sbjct: 96 LGVLIDKNLTFKYHIEHITTKISRTVGLIAKLRH 129 >SB_19323| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 312 Score = 26.2 bits (55), Expect = 7.3 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 308 IGGSFMWINCLFSXVSTTILSLEVEFGDFD 219 +GG+ I C+F + LS+ +E GDFD Sbjct: 20 VGGALFLI-CMFLFIPLPFLSIWLEKGDFD 48 >SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31) Length = 323 Score = 26.2 bits (55), Expect = 7.3 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -1 Query: 232 LGILINKIIGTKYHIALIFSKY-KPIALIWRVVH 134 LG+LI+K + KYHI I +K + + LI ++ H Sbjct: 260 LGVLIDKNLTFKYHIEHITTKISRTVGLIAKLRH 293 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,780,635 Number of Sequences: 59808 Number of extensions: 167111 Number of successful extensions: 351 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 304 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 351 length of database: 16,821,457 effective HSP length: 73 effective length of database: 12,455,473 effective search space used: 523129866 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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