Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0399
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 69 4e-13
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 63 3e-11
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 31 0.17
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 28 0.90
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 28 1.2
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 3.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.4
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 8.4
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 8.4
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 69.3 bits (162), Expect = 4e-13
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Frame = +2
Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
S K I SP++ GPY+QAI A+ +Y SG + + + +++ G QTRQ L NL+
Sbjct: 37 STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94
Query: 419 VLEAGGASLESVVKTTVLLASMDDFQTFNKSMQNIF-QSLPCSNDIRXSRLPL 574
VL G+SL +VK + LA MDDF NK + P + + +PL
Sbjct: 95 VLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPL 147
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 63.3 bits (147), Expect = 3e-11
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +2
Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 463
GPY+QA+ + ++ SG + +D V G + QTR ++NL VL G+SLE +VK
Sbjct: 15 GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73
Query: 464 TVLLASMDDFQTFNKSMQNIF-QSLPCSNDIRXSRLPL 574
+ L +DDF N+ + + +P + ++PL
Sbjct: 74 NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPL 111
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGL 346
+GPYSQ+I A+ ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 368 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 460
C G + T++ +D LR ++AGG E +K
Sbjct: 88 CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 523 NILHRFVESLEVVHASQQNSSFHDRLQRSATSFKYMSQIVQSL 395
+I +RFV SL + H + + +D+L S SF +S+I + L
Sbjct: 1463 SISNRFVFSLFMPHLKKVEAIIYDKLPGSDMSFPSISKIYEEL 1505
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Frame = +3
Query: 465 LFCWLA---WTTSKLSTNLCRIFS 527
+FCW WT+ K LCR FS
Sbjct: 274 IFCWSCINGWTSKKSECPLCRAFS 297
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 332 QKCIRSCPLKLLDCTDLLVDIFPEML-YCFCYFIVIRIF 219
+K +RSC K+L T L D+F + Y F +R F
Sbjct: 1223 EKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFF 1261
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 365 PSVHLDPIREFQKCIRSCPLKLLDCTDLLVDIF 267
P L P+ FQ +R+CPL + LL +IF
Sbjct: 135 PGYSLRPV--FQVRLRACPLGSVQFNPLLAEIF 165
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 280 SRSVQSSNF--SGQDLIHFWNSRIGSRC 357
S+ +Q F SGQD++ FW +R+ C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,345
Number of Sequences: 5004
Number of extensions: 51488
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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