Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0397
         (349 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim...    46   2e-04
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary...    43   0.002
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ...    42   0.004

>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
           Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
           albopictus (Forest day mosquito)
          Length = 349

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = -2

Query: 348 EDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
           EDDVR+YVVKR LP K+GK   KPR KAPKI+
Sbjct: 150 EDDVRQYVVKRPLPEKDGK---KPRTKAPKIQ 178



 Score = 36.7 bits (81), Expect = 0.11
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
           RL+TPVVLQ                K +EAEY K+L  R+++ ++RR+  +
Sbjct: 179 RLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRL 229


>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
           Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
           (Human)
          Length = 249

 Score = 42.7 bits (96), Expect = 0.002
 Identities = 25/51 (49%), Positives = 29/51 (56%)
 Frame = -1

Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
           RLVTP VLQ                K   AEYAKLLA+R KE+K +RQE+I
Sbjct: 178 RLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228



 Score = 37.1 bits (82), Expect = 0.083
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -2

Query: 348 EDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
           EDDVR+YVV++ L  KEGK   KPR KAPKI+
Sbjct: 150 EDDVRQYVVRKPL-NKEGK---KPRTKAPKIQ 177


>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 245

 Score = 41.5 bits (93), Expect = 0.004
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = -2

Query: 348 EDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
           EDDVR+YV++R LP KEGK   K + KAPKI+
Sbjct: 150 EDDVRQYVIRRPLPEKEGK---KAKSKAPKIQ 178



 Score = 41.5 bits (93), Expect = 0.004
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = -1

Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
           RLVTPVVLQ                K   A+YAKLLA+R KE+K +R E++
Sbjct: 179 RLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQL 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,374,131
Number of Sequences: 1657284
Number of extensions: 3709290
Number of successful extensions: 9111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9107
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)