Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0397
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 40 7e-04
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 40 7e-04
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 1.0
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094... 26 7.1
02_05_0956 - 33064104-33066425 26 7.1
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 26 9.3
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 26 9.3
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 26 9.3
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/51 (45%), Positives = 26/51 (50%)
Frame = -1
Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
RLVTP+ LQ KS AEY KLLAQR KE + RR E +
Sbjct: 182 RLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/51 (45%), Positives = 26/51 (50%)
Frame = -1
Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
RLVTP+ LQ KS AEY KLLAQR KE + RR E +
Sbjct: 182 RLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 146 CTEKEGIQGASPGRDQTQAVSFN 78
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>06_02_0068 + 11107493-11107653,11109116-11109218,11109311-11109423,
11109502-11109624,11110165-11110266,11110367-11110532,
11111215-11111331,11111438-11111478,11111735-11111836,
11111924-11112140,11112271-11112498,11112580-11112707,
11112804-11112921,11113020-11113235,11113314-11113463,
11113553-11113629,11113973-11114190,11114443-11114656,
11114744-11114823,11114898-11115015,11115092-11115262,
11116124-11116292,11116404-11116447,11116620-11116662,
11116743-11116888,11118337-11118431,11118579-11119477,
11120540-11120638,11120907-11121002,11123447-11123568,
11123675-11123767,11123922-11124114
Length = 1653
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 46 GHSG*SSWNHALKLTACV*SLPGDAP-WIPS 135
GHS + L LTA V S+P D P W+PS
Sbjct: 1564 GHSVATIHGAVLALTASVLSVPYDMPSWLPS 1594
>02_05_0956 - 33064104-33066425
Length = 773
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 301 LGWEHAFDDITTYII 345
+G EHA DD++TYII
Sbjct: 23 VGVEHATDDVSTYII 37
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 336 RRYVVKRVLPAKEGKENAKPRHKAPKIRG 250
RR +K+ P K+G ENA R++ P +RG
Sbjct: 217 RRLQMKKK-PFKDGAENATWRNRFPVVRG 244
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 25.8 bits (54), Expect = 9.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 293 KKMLNPDIRHLRSEASH 243
K +L PD++ +R+EA+H
Sbjct: 88 KSVLQPDVKRIRTEAAH 104
>06_01_1036 +
8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 25.8 bits (54), Expect = 9.3
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 155 SIFSLRGLALSETLLLQSETMTSTLQNYRGD*PRI-LGALCL-GLAFSFPS 301
S+ SL+G A+ LLQS + +T QN+ D R+ L LCL GL + P+
Sbjct: 515 SLQSLQGKAIEPLELLQSLLLPATKQNH-DDVQRVALRCLCLFGLLENRPN 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,380,700
Number of Sequences: 37544
Number of extensions: 103830
Number of successful extensions: 282
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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