Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0397
(349 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 42 2e-04
SB_53634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 27 3.2
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 27 3.2
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 27 3.2
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 27 4.2
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 27 4.2
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9) 26 7.3
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_10749| Best HMM Match : DB (HMM E-Value=1.5) 26 7.3
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 26 9.7
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 26 9.7
SB_270| Best HMM Match : PHD (HMM E-Value=0.0037) 26 9.7
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2) 26 9.7
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 26 9.7
SB_19724| Best HMM Match : Motilin_ghrelin (HMM E-Value=2.2) 26 9.7
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11) 26 9.7
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = -2
Query: 348 EDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
EDDVR+YV++R LP KEGK K + KAPKI+
Sbjct: 117 EDDVRQYVIRRPLPEKEGK---KAKSKAPKIQ 145
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = -1
Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
RLVTPVVLQ K A+YAKLLA+R KE+K +R E++
Sbjct: 146 RLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQL 196
>SB_53634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 120 CVARKRSNAGGQLQCVIPRALARVSAKVIYCILNKKY 10
C+ R+ + G+L+ V+PR A + C+ N+KY
Sbjct: 107 CLRRRTIDQIGKLESVLPRKKTVKVAVSVECLTNEKY 143
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 338 YVVMSSNACSQPRKEKKMLNPDIRHLR 258
Y V + C+ PR K+L P + HLR
Sbjct: 50 YSVFPNGLCTCPRNFTKLLKPPLSHLR 76
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -1
Query: 175 SSEAEYAKLLAQRKKESKVRRQEEI 101
++EAE +L Q+K+E K +R+EE+
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEM 1197
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 338 YVVMSSNACSQPRKEKKMLNPDIRHLR 258
Y V + C+ PR K+L P + HLR
Sbjct: 50 YSVFPNGLCTCPRNFTKLLKPPLSHLR 76
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 237 TGVTSLGS*VPYVWV*HFLFLPWLG--ARV*RH 329
T + +L + VW+ H +F PW+G A++ RH
Sbjct: 683 TQIVALRTKFKRVWIYHLMFNPWVGQVAKLERH 715
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 345 DDVRRYVVKRVLPAKEGKENAKPR 274
DDV+ ++K ++P KEG E+ P+
Sbjct: 35 DDVKHRLLKPLVPEKEGPESLDPK 58
>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
Length = 748
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 345 DDVRRYVVKRVLPAKEGKENAKP 277
DDV+ ++K ++P KEG E+ P
Sbjct: 35 DDVKHRLLKPLVPEKEGPESLDP 57
>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 345 DDVRRYVVKRVLPAKEGKENAKP 277
DDV+ ++K ++P KEG E+ P
Sbjct: 35 DDVKHRLLKPLVPEKEGPESLDP 57
>SB_10749| Best HMM Match : DB (HMM E-Value=1.5)
Length = 616
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 102 ISSWRRTLDSFFLCASN 152
IS+ R+ L+ FF+CASN
Sbjct: 103 ISNCRKLLERFFICASN 119
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIF 348
L G S+FF+F+ E AFD + II+
Sbjct: 91 LAKGKSLFFAFVDLEKAFDRVPRDIIW 117
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIF 348
L G S+FF+F+ E AFD + I++
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILW 654
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIF 348
L G S+FF+F+ E AFD + I++
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILW 571
>SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)
Length = 251
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIF 348
L G S+FF+F+ E AFD + I++
Sbjct: 66 LAKGKSLFFAFVDLEKAFDRVPRVILW 92
>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
Length = 317
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIF 348
L G S+FF+F+ E AFD + I++
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILW 222
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 169 EAEYAKLLAQRKKESKVRRQEE 104
E + +L+AQRK E ++RR++E
Sbjct: 423 ERKKQELIAQRKLEEEIRREQE 444
>SB_19724| Best HMM Match : Motilin_ghrelin (HMM E-Value=2.2)
Length = 242
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 150 CLHRERRNPRCVARKRSNAGGQLQCVIP-RALARVSAKVIYCILNKKYKTL 1
C H + P C R R G L V+P A + K + + +KY+ L
Sbjct: 47 CCHTDWVIPSCAWRNRITGPGILVIVLPINARVGIPCKSVVQHIRRKYRCL 97
>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
Length = 806
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 169 EAEYAKLLAQRKKESKVRRQE 107
EAE A L AQR++E +VR QE
Sbjct: 618 EAEEAALRAQREEEWRVRLQE 638
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,518,250
Number of Sequences: 59808
Number of extensions: 118122
Number of successful extensions: 387
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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