Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0397
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   2.8  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    26   8.5  
AL021571-5|CAA16513.2|  140|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 92  PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 229
           P F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 70  PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 128 FLLSLCKQFSIFSLRGLALSETLLL 202
           FL+S    FSIF++ G A S+ L+L
Sbjct: 283 FLMSTVSVFSIFAIGGFAFSDDLIL 307


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 348 EDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
           +DD RRY  K +    +   N KPR+K  K
Sbjct: 276 DDDGRRYFCKLLKQIAQKTANPKPRYKLSK 305


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 92  PAFDLFLATHLGFLLSLCKQFSIFSLRGL 178
           P  D+FL THL F L       +F++ G+
Sbjct: 72  PMIDMFLTTHLDFTLCFFVGLLLFAVFGV 100


>AL021571-5|CAA16513.2|  140|Caenorhabditis elegans Hypothetical
           protein T19A6.3a protein.
          Length = 140

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 92  PAFDLFLATHLGFLLSLCKQFSIFSLRGL 178
           P  D+FL THL F L       +F++ G+
Sbjct: 70  PMIDMFLTTHLDFTLCFFVGLLLFAVFGV 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,244,347
Number of Sequences: 27780
Number of extensions: 87829
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)