Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0397
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)              36   0.007
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...    36   0.007
At5g01430.1 68418.m00056 Got1-like family protein contains Pfam ...    27   4.5  
At3g49420.1 68416.m05402 Got1-like family protein contains Pfam ...    27   4.5  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -1

Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
           RLVTP+ LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 182 RLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -1

Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
           RLVTP+ LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 182 RLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At5g01430.1 68418.m00056 Got1-like family protein contains Pfam
           profile: PF04178 Got1-like family
          Length = 140

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 271 MSGFSIFFSFLGWEHAFD 324
           ++GF +FFSFLG    FD
Sbjct: 16  LTGFGVFFSFLGIVFVFD 33


>At3g49420.1 68416.m05402 Got1-like family protein contains Pfam
           profile: PF04178 Got1-like family
          Length = 140

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 271 MSGFSIFFSFLGWEHAFD 324
           ++GF +FFSFLG    FD
Sbjct: 16  LTGFGVFFSFLGIVFVFD 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,903,818
Number of Sequences: 28952
Number of extensions: 81837
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)