Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0395
(289 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 111 2e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 66 7e-13
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 56 1e-09
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 49 1e-07
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 2.9
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 24 3.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 3.8
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 23 6.7
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb... 23 6.7
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 23 6.7
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 23 8.8
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 23 8.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 23 8.8
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 23 8.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 111 bits (267), Expect = 2e-26
Identities = 47/63 (74%), Positives = 53/63 (84%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSXLQLERINVYYNEASGGKYV 245
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 246 PRA 254
PRA
Sbjct: 61 PRA 63
Score = 26.2 bits (55), Expect = 0.95
Identities = 12/15 (80%), Positives = 14/15 (93%), Gaps = 1/15 (6%)
Frame = +2
Query: 248 PR-LLVDLEPGTMDS 289
PR +LVDLEPGTMD+
Sbjct: 61 PRAVLVDLEPGTMDA 75
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 66.5 bits (155), Expect = 7e-13
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = +3
Query: 69 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSXLQLERINVYYNEASGGKYVP 248
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 249 RA 254
RA
Sbjct: 63 RA 64
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 56.0 bits (129), Expect = 1e-09
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSXLQLE--RINVYYNEASGGK 239
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 240 YVPRA 254
YVPR+
Sbjct: 61 YVPRS 65
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 49.2 bits (112), Expect = 1e-07
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSXLQLERINVYYNEA 227
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 228 SGGKYVPRA 254
GK+VPR+
Sbjct: 61 GQGKFVPRS 69
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 183 SXLQLERINVYYNEASGGKYVPRAS 257
S L +E I+ Y A KY+PR++
Sbjct: 635 SFLDIENIDEYLESAENMKYLPRST 659
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 24.2 bits (50), Expect = 3.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 168 AYHGDSXLQLERINVYYNEASGGKYVPR-ASSSTWSPAP 281
A HG + +L YY + G Y P ASS+ +PAP
Sbjct: 113 AGHGFTAAELLNAPDYYASSPYGGYSPSGASSARQTPAP 151
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 24.2 bits (50), Expect = 3.8
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 122 VLGDHLRRARHR-PHRCLPWGLXLAVGAHQCILQ*SLRRQVRAPRLLVDLEPGTMD 286
+ G H + H+ P+ + L ++C+ S + + P+L DLEP +D
Sbjct: 1060 LFGIHFHKLSHKNPNEIIRMILHCDDSMNECVEFLSSDKVLNQPKLKADLEPYRID 1115
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 23.4 bits (48), Expect = 6.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 132 IISDEHGIDPTGAYHGDSXLQLERINVYYNE 224
I+ +HG+D G + GDS ++ + Y++
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSK 311
>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 120
Score = 23.4 bits (48), Expect = 6.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 281 WCRAPSRRGGAGHVLAAGGFIVVYIDALQLQVRVP 177
WC G AG++L G +V + D QVR+P
Sbjct: 26 WCVMTYTFGVAGYMLGQRGLLVQHED----QVRIP 56
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.4 bits (48), Expect = 6.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 157 SMPCSSEMISQNLAPIWLPH*PAWICTISLILFYLC 50
S+ SE+ S N+ + + P IC+ SL F LC
Sbjct: 683 SLAKMSEIRSLNVQTVSVKGFPRRICSNSLFYFVLC 718
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 111 IGAKFWEIISDEHGIDPTGAYHG 179
+GA W ++ DE G P+ G
Sbjct: 439 LGASIWALVEDEEGKIPSRGKKG 461
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 23.0 bits (47), Expect = 8.8
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 88 WICTISLILFYL 53
W+ +SL+LFYL
Sbjct: 220 WLANVSLLLFYL 231
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 23.0 bits (47), Expect = 8.8
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 255 SSSTWSPAPW 284
SSST SPAPW
Sbjct: 417 SSSTSSPAPW 426
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 23.0 bits (47), Expect = 8.8
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +3
Query: 48 SHK*NKMREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSXL 191
+H+ + M ++ + G+C ++ + + I S+ + P G+ DS L
Sbjct: 278 NHETDDMNKVYGFE-GECRSKYNERTFNIFSETFSLLPLGSLISDSYL 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,501
Number of Sequences: 5004
Number of extensions: 18309
Number of successful extensions: 57
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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