Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0395
         (289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.32 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   0.57 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   3.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   7.0  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    20   7.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   7.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.32
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 131 LPELSSDLVAALTSLDMYDFPHFVLFM 51
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 0.57
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 192 QLERINVYYNEASGGKYVPRASSSTWSPA 278
           QL+R ++ +N    G+  PR+ +++ SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 71   PHFVLFM*TINYLTLKIXPH 12
            P   L   T N LT+K+ PH
Sbjct: 1370 PQITLTATTTNSLTMKVRPH 1389



 Score = 21.4 bits (43), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 272  APSRRGGAGHVLAAGGFIVVY 210
            APSR+ G+GH    GG +  Y
Sbjct: 1922 APSRQTGSGHG-GHGGLLTPY 1941


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 180 DSXLQLERINVYYNEASGGKYV 245
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 257 GGAGHVLAAGGFIVVYIDALQLQVRVP 177
           G  G V A G  +VVYI      +R P
Sbjct: 60  GMLGFVSAMGNGMVVYIFLSTKSLRTP 86


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 75 FPSFCFIYVNY 43
          FPS  FI +NY
Sbjct: 11 FPSTSFILINY 21


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 252 ASSSTWSPA 278
           AS +TWSPA
Sbjct: 515 ASPTTWSPA 523


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 193 SWSASMYTTMKPPAASTCPAPPRRLG 270
           S+  SMY +    A    P+PPR  G
Sbjct: 378 SYVNSMYASGAQFATPCTPSPPRGPG 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,073
Number of Sequences: 438
Number of extensions: 1429
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)