Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0392
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.44
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.44
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 29 0.44
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 27 1.0
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 1.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 2.3
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 4.1
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 25 7.1
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 7.1
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 7.1
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 24 9.4
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 24 9.4
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 0.44
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 226 RDGKYFIAAVDVENQKYRKTHWNATNTSKMR--MSNSPRAVRDCVASSK*MERE*CKPEG 399
RDGKY IAA+ E KY T W++ M+ ++++ VR +AS M+ E C
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASE--MDGE-CVCCA 1567
Query: 400 SLANC 414
S ANC
Sbjct: 1568 SFANC 1572
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 0.44
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 226 RDGKYFIAAVDVENQKYRKTHWNATNTSKMR--MSNSPRAVRDCVASSK*MERE*CKPEG 399
RDGKY IAA+ E KY T W++ M+ ++++ VR +AS M+ E C
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASE--MDGE-CVCCA 1567
Query: 400 SLANC 414
S ANC
Sbjct: 1568 SFANC 1572
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 28.7 bits (61), Expect = 0.44
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 169 QPWQEWSDHYTCHRYR-CEIRDGKYFIAAVDVENQKYRK 282
+ +++W+ T + +R C+ D ++F+ A +N+KY+K
Sbjct: 97 EAYEDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKYKK 135
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 225 QRREILHSCCGCRKPKIPENALECHEYIEDENVEFPT 335
+RR LH +P ECHE I++E+V+ P+
Sbjct: 79 KRRIWLHGVLRFHRPLHLFQTSECHELIQEESVKSPS 115
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 172 PWQEWSDHYTCHRYRCEIRDG 234
P+Q+W D+Y C Y +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 2.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
S +SSP T SP +S++ + + +S+ SSS S SS+ S
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 255 GCRKPKIPENALECHEYIEDEN 320
G K IP+N EC E + DE+
Sbjct: 1567 GRSKVTIPQNMFECKELVADEH 1588
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 344 RTARGE--FDILIFDVFVAFQCVFRYFWFSTSTAAMKYFPSL 225
R RG+ FD+ F + F VF+ + A K FPS+
Sbjct: 214 RVNRGQDQFDLSSFPLLKVFSSVFKVAYSKALLDAEKLFPSI 255
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 192 SLHVPPLQMRDQRREILHSCC 254
S+HVPPL + + EI S C
Sbjct: 848 SIHVPPLNVPNAEGEIEESVC 868
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 403 GCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSW 296
GC L C ILSP R R HV + T +SW
Sbjct: 377 GCALSCAILSP----VFRVREFHVHDVTTYPITFSW 408
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 201 VPPLQMRDQRREILHSCCGCRKPKIPEN 284
VPP +QRR + +C CR+ KI N
Sbjct: 27 VPP----EQRRRVFRACKHCRQKKIKCN 50
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 279 PVFLV-FDIHSSYEVFPVSDLASVAVARVVIRPLLPRLVTFPGVFI 145
PV L+ F+ H S+ P SDL+S V L+ ++FP + I
Sbjct: 739 PVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPNLRI 784
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,162
Number of Sequences: 5004
Number of extensions: 41188
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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