Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0392
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   4.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +1

Query: 139 CVDKYSRKGYQPWQEWSDHYTCHRYRCEIRD 231
           CV+ Y R     W + + H+   +  C + D
Sbjct: 110 CVNPYDRDSLSCWLQMTKHHNFIKV-CSVND 139


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 175 WQEWSDHYTCHRYRCEIRDGKYFIAAVDVENQKYRKTHW 291
           W E    Y  H++     D  Y  AA+D E  K   T W
Sbjct: 175 WNEERKQYYLHQFATGQPDLNYRSAALDQE-MKNVLTFW 212


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 311 R*ECRIPHVLCAIALRRRSKWRE 379
           R EC +P   CA+  + +   +E
Sbjct: 50  RPECMVPEYQCAVKRKEKKAQKE 72


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 275 YFWFSTSTAAMKYFPSLI 222
           Y WF+TS    + F  LI
Sbjct: 549 YIWFTTSGTISEKFRKLI 566


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 275 YFWFSTSTAAMKYFPSLI 222
           Y WF+TS    + F  LI
Sbjct: 602 YIWFTTSGTISEKFRKLI 619


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 433 FHGLSGNSSPGC 398
           F GL GNS+ GC
Sbjct: 316 FVGLVGNSAVGC 327


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 409  SPGCPLVCTILSPFTST 359
            +PG P   T LSP ++T
Sbjct: 1498 APGIPPAATFLSPNSTT 1514


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 409  SPGCPLVCTILSPFTST 359
            +PG P   T LSP ++T
Sbjct: 1494 APGIPPAATFLSPNSTT 1510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,148
Number of Sequences: 438
Number of extensions: 2907
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)