Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0391
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    25   0.38 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   2.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.2  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 86  NLLIKETNSLL*IMYICHYY 27
           N LI+E++S++   Y CH+Y
Sbjct: 178 NRLIEESSSVMEAAYSCHWY 197


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 333 FDNSVQIIDAKKGQNVLKRVQL 398
           F N  QI+D K   NV K++ +
Sbjct: 508 FSNEEQIVDLKAFNNVPKKLNM 529


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 333 FDNSVQIIDAKKGQNVLKRVQL 398
           F N  QI+D K   NV K++ +
Sbjct: 508 FSNEEQIVDLKAFNNVPKKLNM 529


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 129 KKYAFIFVVCFIS 91
           +K  FI +VCF+S
Sbjct: 414 RKELFIAIVCFVS 426


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 129 KKYAFIFVVCFIS 91
           +K  FI +VCF+S
Sbjct: 467 RKELFIAIVCFVS 479


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 300 RQHPHHTFHTRNY 262
           R HP +   TRNY
Sbjct: 344 RNHPEYIDETRNY 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,189
Number of Sequences: 438
Number of extensions: 1975
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)