Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0390
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    28   0.46 
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   1.4  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 219 QVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSV 347
           ++ I+   ++ ++  S++ E YD    EI++L      FD SV
Sbjct: 838 KISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSV 880


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 380 KHFAFLRVYYWNRIVKWKIIEG*IFYFVSILIIHFTQET 264
           KH   LR+YY N  V +        +FV++ ++ FT  T
Sbjct: 145 KHNWMLRLYYGNNKVLFIFCAANEMFFVALYLLSFTPRT 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,489
Number of Sequences: 5004
Number of extensions: 24358
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)