Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0390
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    27   4.1  
03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693     27   4.1  
03_06_0169 - 32125193-32125666,32125774-32126148                       27   5.5  
06_03_1289 - 29018333-29018388,29018484-29018563,29018917-290191...    26   9.5  
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883     26   9.5  

>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 231 DSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVPIID 359
           D+N    +DK S  C   D++ DE  D+T  + P DN    ID
Sbjct: 467 DTNLSSEVDKLSKSCNPTDQNNDEKNDVTSAHSPKDNMDNDID 509


>03_06_0162 - 32099985-32101130,32101844-32102498,32102509-32102693
          Length = 661

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 243 IRLLDKYSFLCEMYDEDADEIKDLTLNYFPF 335
           +  LD+   +C+MYD D   I D+T+    F
Sbjct: 549 VESLDELYMVCQMYDSDMKTIYDVTVYRMDF 579


>03_06_0169 - 32125193-32125666,32125774-32126148
          Length = 282

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 243 IRLLDKYSFLCEMYDEDADEIKDLTLNYFPF 335
           +  LD+   +C+MYD + + I D+T+    F
Sbjct: 172 VESLDELYMVCQMYDSEMETIYDVTVYRMDF 202


>06_03_1289 -
           29018333-29018388,29018484-29018563,29018917-29019108,
           29019217-29019447,29019532-29020379
          Length = 468

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 113 FL*SVLLAHNLLIKETNSLL*IMYICH 33
           +L  V+LA+ ++I  T SLL  MYI H
Sbjct: 79  YLVFVVLAYMIIILVTGSLLVFMYIAH 105


>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
          Length = 424

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 113 FL*SVLLAHNLLIKETNSLL*IMYICH 33
           +L  V+LA+ ++I  T SLL  MYI H
Sbjct: 79  YLVFVVLAYMIIILVTGSLLVFMYIAH 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,734,980
Number of Sequences: 37544
Number of extensions: 116270
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)