Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0390
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)                  33   0.086
SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_44453| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)                  26   9.8  
SB_17788| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_22852| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)
          Length = 93

 Score = 33.1 bits (72), Expect = 0.086
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVPIIDAKKGKMF 380
           ++++FL E YD  A   +   L ++  DNSV + D K  ++F
Sbjct: 5   ERFAFLAEWYDPQAALTRKYQLLFYASDNSVEMYDIKNRRLF 46


>SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 365 LRVYYWNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAI 231
           L V+Y NR++   ++     YFV +L +H+T   I +   YT  +
Sbjct: 64  LPVHYTNRVI---VLPVNYTYFVIVLPVHYTNRVIVLPVHYTYLV 105


>SB_44453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 23  SHNNDIYTLFITENSFL 73
           SH++DI TLF+++N FL
Sbjct: 103 SHHHDITTLFLSQNLFL 119


>SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)
          Length = 336

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 231 DSNGIRLLDKYSFLCEMYDEDADEIKDLT 317
           D + +R L + S   E+YDED D++   T
Sbjct: 299 DRSQVRKLSRESLDLELYDEDQDDVLPAT 327


>SB_17788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 208 PNINRLISIAMVYDYLINIVSCVKC 282
           P I RLI +A+   Y INI SCVKC
Sbjct: 154 PFIARLIQMAVPTLY-INIRSCVKC 177


>SB_22852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 231 DSNGIRLLDKYSFLCEMYDEDADEIKDLT 317
           D + +R L + S   E+YDED D++   T
Sbjct: 16  DRSQVRKLSRESLDLELYDEDQDDVLPAT 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,773,567
Number of Sequences: 59808
Number of extensions: 158762
Number of successful extensions: 390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)