Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0390
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    30   0.70 
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    30   0.70 
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    30   0.70 
U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-lik...    29   1.2  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    27   3.7  

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>U64601-9|AAB04578.1|  314|Caenorhabditis elegans Hypothetical
           protein M03F4.7a protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           D DSNG   LD+  + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186


>AF228528-1|AAF34189.1|  314|Caenorhabditis elegans calumenin-like
           protein protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 225 DIDSNGIRLLDKYSFLCEMYDEDADEIKDLTL 320
           D DSNG   LD+  + C M+ ED D ++D+ +
Sbjct: 157 DYDSNGA--LDRTEYGCFMHPEDCDHMRDVVV 186


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 359 VYYWNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAIDINLFMLGNKSM 195
           V Y+     W + E   F+F+S+  I F   T     S+T+A+   +F+LG  S+
Sbjct: 241 VAYFAYFENWTLFESVYFFFISMTTIGFGDFTP----SHTVAVGGIVFILGGLSV 291


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 279 FHTRNYIYQVVVYHCYRYQPVYV 211
           F+TR   + V+ +HC  Y P+Y+
Sbjct: 128 FNTRTSYFLVIEHHCGIYNPIYM 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,715,856
Number of Sequences: 27780
Number of extensions: 134426
Number of successful extensions: 409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)