BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0390 (398 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g10320.1 68416.m01238 expressed protein contains Pfam domain,... 31 0.37 At5g61060.1 68418.m07662 histone deacetylase family protein simi... 29 1.5 At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putati... 28 2.0 At2g22450.1 68415.m02662 riboflavin biosynthesis protein, putati... 28 2.0 At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin ... 27 6.1 At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 26 8.0 >At3g10320.1 68416.m01238 expressed protein contains Pfam domain, PF04577: Protein of unknown function (DUF563) Length = 494 Score = 30.7 bits (66), Expect = 0.37 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +3 Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKD---LTLNYFPFDNSVPIIDAK 365 K++ +D NG ++L + S L E YD+D +KD +T + F + + D K Sbjct: 421 KKLGLDYNGYKILPRESSLYEKYDKDDPILKDPNSITKKGWQFTKGIYLNDQK 473 >At5g61060.1 68418.m07662 histone deacetylase family protein similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens}; contains Pfam profile PF00850: Histone deacetylase family Length = 660 Score = 28.7 bits (61), Expect = 1.5 Identities = 8/29 (27%), Positives = 19/29 (65%) Frame = +1 Query: 37 HIYIIHNREFVSLMRRLCANKTDYKNKRI 123 H+ ++H ++ V+L++ + + DY+ RI Sbjct: 81 HLQLVHTKDHVNLVKSISTKQKDYRRNRI 109 >At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putative (RIBA) similar to SP|P47924 {Arabidopsis thaliana}, SP|P51695 Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] {Bacillus amyloliquefaciens}; contains Pfam profiles PF00925: GTP cyclohydrolase II, PF00926: 3,4-dihydroxy-2-butanone 4-phosphate synthase Length = 384 Score = 28.3 bits (60), Expect = 2.0 Identities = 12/48 (25%), Positives = 23/48 (47%) Frame = +3 Query: 213 HKQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVPII 356 H + +D + LD LCE+ D+D + L F +N++ ++ Sbjct: 111 HTEASVDLTVLAGLDPVGVLCEIVDDDGSMARLPKLREFAAENNLKVV 158 >At2g22450.1 68415.m02662 riboflavin biosynthesis protein, putative similar to SP|P50855 Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] {Actinobacillus pleuropneumoniae}; contains Pfam profiles PF00925: GTP cyclohydrolase II, PF00926: 3,4-dihydroxy-2-butanone 4-phosphate synthase Length = 476 Score = 28.3 bits (60), Expect = 2.0 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +3 Query: 213 HKQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVPII 356 H + +D + L+ S LCE+ D+D + L F +N++ +I Sbjct: 248 HTEASVDLTVLAGLEPVSVLCEIVDDDGSMARLPRLRQFAQENNLKLI 295 >At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein contains Pfam profiles: PF01453 lectin (probable mannose binding), PF00024 PAN domain Length = 476 Score = 26.6 bits (56), Expect = 6.1 Identities = 9/33 (27%), Positives = 20/33 (60%) Frame = -3 Query: 132 VKKYAFIFVVCFISTQSSHQRNEFSVMNNVYMS 34 +K Y F F++C S H +++ S+ N++ ++ Sbjct: 3 MKFYTFTFLICLFSKLQGHCKSDISLGNSLTLT 35 >At5g61460.1 68418.m07712 structural maintenance of chromosomes (SMC) family protein very strong similarity to SMC-like protein (MIM) [Arabidopsis thaliana] GI:5880614; contains Pfam profile PF02463: RecF/RecN/SMC N terminal domain Length = 1057 Score = 26.2 bits (55), Expect = 8.0 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 70 SLMRRLCANKTDYKNKRIFFYE 135 SL R CAN+ +Y+N +I Y+ Sbjct: 514 SLTLRGCANEANYRNLKIIIYD 535 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,853,710 Number of Sequences: 28952 Number of extensions: 110249 Number of successful extensions: 282 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 279 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 282 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 575830496 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -