Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0388
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0475 - 3818121-3820565                                           28   2.0  
02_01_0750 + 5574707-5576017                                           28   2.0  
12_01_0272 + 1985348-1986036,1986142-1988020                           27   3.5  
11_01_0788 + 6599962-6602700                                           27   3.5  
11_01_0271 + 2039100-2041760                                           27   3.5  
02_02_0640 - 12528075-12528363,12531326-12532311                       27   4.6  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    26   8.1  

>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 LKMDMNNPPNQSYWFVLREDQSNVILS-TNNFVNQNPQ 232
           + +  +NPPN  YW    E  S+ ++S  N  +N NP+
Sbjct: 209 IDLSRSNPPNM-YWSWSSEKSSSALISLLNQLININPE 245


>02_01_0750 + 5574707-5576017
          Length = 436

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 345 FFLWLAIMFLYDYRRFIYVDKLSIFSCFYYDLVS 244
           FF++ + +FL   +RFIY+D L    C Y D+ S
Sbjct: 305 FFMYKSKLFLGSQKRFIYIDILDGTVC-YVDIPS 337


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 364 SLVVLQLFLVVGYHVLVRLSEV 299
           S++VL +FL VG HVLV + EV
Sbjct: 450 SVLVLPVFLYVGIHVLVFMLEV 471


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 147 GGLFISIFNEKYLNN--YKYLHDSVLKNRRIVFSMKTLYT*LQGY 19
           GGLF S+  E Y+ N  YK L D ++ N  I   +   Y  L G+
Sbjct: 382 GGLFSSVKLESYIWNEMYKQLGDELVNNDHIRAILNLSYRDLPGH 426


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 364 SLVVLQLFLVVGYHVLVRLSEV 299
           S++VL +FL VG HVLV + EV
Sbjct: 485 SVLVLPVFLYVGIHVLVFMLEV 506


>02_02_0640 - 12528075-12528363,12531326-12532311
          Length = 424

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 202 TKYHIALIFSKYKPIALIWRVVHIH 128
           +K  +AL F  Y P A +WRV+  H
Sbjct: 381 SKKRLALEFQVYNPAAKMWRVLTTH 405


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -2

Query: 362 FSSTTTFSCGWLSCSCTIIGGSFMWINCLFSPVSTTILSLEVEF 231
           F S   ++CGW  CS       +M   C +S     I    V+F
Sbjct: 186 FRSRAKWTCGWHLCSTCEKAVQYMCYTCTYSLCKGCIKQKPVKF 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,608,036
Number of Sequences: 37544
Number of extensions: 145704
Number of successful extensions: 278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)