Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0388
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_40705| Best HMM Match : Hormone_5 (HMM E-Value=5.7)                 27   6.3  
SB_45390| Best HMM Match : Glyco_transf_10 (HMM E-Value=2.5e-20)       26   8.3  
SB_54846| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31)                   26   8.3  

>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 262  ETGENRQFIHINEPPIIVQEHDSQPQE 342
            E GE  Q  HIN   I+V E    PQE
Sbjct: 1139 EVGEELQIFHINPGSIVVTELPPSPQE 1165


>SB_40705| Best HMM Match : Hormone_5 (HMM E-Value=5.7)
          Length = 282

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 356 STTTFSCG--WLSCSCTIIGGSFMWINCL 276
           S  TF C    + CS   IGGS + I CL
Sbjct: 36  SALTFGCSAQTIGCSAQTIGGSALTIGCL 64


>SB_45390| Best HMM Match : Glyco_transf_10 (HMM E-Value=2.5e-20)
          Length = 435

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +2

Query: 113 YFSLKMDMNNPPNQSY-----WFVLREDQSNVILSTNNF--VNQNPQIP 238
           +FS +  MNNPP++ Y     W +  + +S++ +S   +  V +  +IP
Sbjct: 171 FFSKENPMNNPPSKRYDFYFNWTMTYKQESDIFISYGYYFPVKRKKKIP 219


>SB_54846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 232 LGILINKIIGTKYHIALIFSKY-KPIALIWRVVH 134
           LG+LI+K +  KYHI  I +K  + + LI ++ H
Sbjct: 96  LGVLIDKNLTFKYHIEHITTKISRTVGLIAKLRH 129


>SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31)
          Length = 323

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 232 LGILINKIIGTKYHIALIFSKY-KPIALIWRVVH 134
           LG+LI+K +  KYHI  I +K  + + LI ++ H
Sbjct: 260 LGVLIDKNLTFKYHIEHITTKISRTVGLIAKLRH 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,147
Number of Sequences: 59808
Number of extensions: 179596
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)