Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0387
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 31 0.087
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 30 0.12
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 0.81
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 26 2.5
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 2.5
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 4.3
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 4.3
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 25 4.3
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 25 5.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 5.7
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 24 7.6
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 24 7.6
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 24 7.6
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 24 7.6
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 10.0
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 24 10.0
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 24 10.0
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 30.7 bits (66), Expect = 0.087
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 211 VQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMP 327
+Q IL+ +A +GD + PKPP + I P+ P P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 30.3 bits (65), Expect = 0.12
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 253 AVKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 393
AVKH P PP P+ +SP MP PLT S T S PE+ P S
Sbjct: 739 AVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
Score = 23.8 bits (49), Expect = 10.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 136 GKASSVISRAWDYVDDTDK 192
G ++++ WDY D DK
Sbjct: 42 GLPQKILAKIWDYCDQEDK 60
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 0.81
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 94 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYAVKHQ 267
NQ S D+D+ ASS++S A D+D N+ +A GD + +H+
Sbjct: 3 NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 2.5
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 100 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAIL-NVQEILKDMASQGDYAVKHQRWP 276
Y+D+E P D + K S+++ +A+ +V + + L N I + + G + R+P
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFVPGLENIRSYLPNRHWIESNAITTGKAVEELPRFP 217
Query: 277 KPPE 288
P+
Sbjct: 218 DDPK 221
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 2.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 282 RFGPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVVP 166
RFGPPLM + L G V+ +++ G S+ID P
Sbjct: 286 RFGPPLMKTTSVVL-GLVVGMIISAATGYWDHSIIDAAP 323
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 4.3
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +1
Query: 55 VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDM 234
V T+A A + + +DNEIP D A+S + D+ I L+ +L +
Sbjct: 386 VKTAAELASLQNVTETTDNEIPNSPDFLDAAS----------EEDEHIPSLDSSSLLTPL 435
Query: 235 ASQGDYAVKHQRWPKPPELSPIYLPVS 315
A A + ++ P SP+ P S
Sbjct: 436 ALPNKKAFQPVKFRVPSFSSPLVKPAS 462
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +1
Query: 271 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 387
+P P +S P Y +PVSP +PV P +S + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 4.3
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 172 YVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVS 315
+V D ++ +L+ I K KH P PP S LP+S
Sbjct: 114 FVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMS 161
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 247 DYAVKHQRWPKPPELSPIYLPVSPV 321
+Y+ P+PP+L+P++L V V
Sbjct: 107 EYSTIEYTLPRPPQLTPVFLFVVDV 131
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 24.6 bits (51), Expect = 5.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 288 IIAHLSAGIPGDACAAANVINSYTDGVRSGNFA-GF 392
+I +A + D A N+I+ Y + GNFA GF
Sbjct: 646 LIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 681
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.2 bits (50), Expect = 7.6
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 64 SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEIL 225
S +PSV+I +EIP + + + A DY+ T I++V ++
Sbjct: 80 SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV 133
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/48 (22%), Positives = 21/48 (43%)
Frame = +1
Query: 133 DGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWP 276
DGK ++ + +Y ++ S + + D S GD + + R P
Sbjct: 241 DGKIQELVDKMNNYYNNDGASSWVFTADHGMSDFGSHGDGNLDNTRTP 288
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 24.2 bits (50), Expect = 7.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -3
Query: 127 CRVEFHYHCID*W 89
C FH+HCI W
Sbjct: 74 CNHAFHFHCISRW 86
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 334 AAQASPGIPADRWAIIPAVWATADA*LHNRPGWPCPSR 221
A P + D++A P + + A ++ WP PSR
Sbjct: 110 AKYIDPAVYYDKYARSPYIMSPFVACVNTLSAWPAPSR 147
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 237 QPGRLCSQASAVAQTAGIIAHLSAGIPGDACAAANVINSYT 359
QPG L +++ A A AG+ DA AAN S+T
Sbjct: 348 QPGLLGGSSNSAGPIAAATA---AGVGADASDAANTGGSFT 385
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 23.8 bits (49), Expect = 10.0
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 214 QEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMPVQP-LTSLTLTQTASGPETSPA 390
++I K++A+ WP PP + L V+ QP ++ + T S T P+
Sbjct: 405 RDIAKNVATWLKNGENFSSWPLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPS 464
Query: 391 SDN 399
S +
Sbjct: 465 SQS 467
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 148 SVISRAWDYVDDTDKSIAIL 207
+V AW Y++D+ +SIA L
Sbjct: 177 NVTKVAWTYINDSTRSIACL 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,001
Number of Sequences: 5004
Number of extensions: 31528
Number of successful extensions: 116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -