Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0387
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     23   2.4  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    23   2.4  
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z46242-13|CAA86328.1|  135|Caenorhabditis elegans Hypothetical p...    27   6.5  
U61947-2|AAB03135.1|  498|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z48716-3|CAA88599.1|   96|Caenorhabditis elegans Hypothetical pr...    26   8.7  
X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.        26   8.7  
AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    26   8.7  
AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and gl...    26   8.7  

>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 23.4 bits (48), Expect(2) = 2.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 175 VDDTDKSI--AILNVQEILKDMASQGDYAVKHQRWPKPP 285
           ++D+D SI  ++LN Q++LK +     YA+  + W   P
Sbjct: 254 LEDSDSSIVVSVLNKQQLLKTVKHPSIYAMS-KMWISIP 291



 Score = 23.0 bits (47), Expect(2) = 2.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 91  INQYSDNEIPRDIDDGKASSVISRAWDYVDDTD 189
           INQ   N +   +DDG  + V+ +   Y+ D D
Sbjct: 205 INQMRSNLVTV-VDDGAQNPVVKKVISYLRDAD 236


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 23.4 bits (48), Expect(2) = 2.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 175 VDDTDKSI--AILNVQEILKDMASQGDYAVKHQRWPKPP 285
           ++D+D SI  ++LN Q++LK +     YA+  + W   P
Sbjct: 254 LEDSDSSIVVSVLNKQQLLKTVKHPSIYAMS-KMWISIP 291



 Score = 23.0 bits (47), Expect(2) = 2.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 91  INQYSDNEIPRDIDDGKASSVISRAWDYVDDTD 189
           INQ   N +   +DDG  + V+ +   Y+ D D
Sbjct: 205 INQMRSNLVTV-VDDGAQNPVVKKVISYLRDAD 236


>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
            H05L14.2 protein.
          Length = 2162

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 127  CRVEFHYHCID*W 89
            C  E+HYHCI  W
Sbjct: 2126 CTREYHYHCISRW 2138


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
            protein H05L14.2 protein.
          Length = 2162

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 127  CRVEFHYHCID*W 89
            C  E+HYHCI  W
Sbjct: 2126 CTREYHYHCISRW 2138


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 292 SPIYLPVSPVMPVQPLTSLTLTQTASGPETSP 387
           S IYLP      V+P +S+ L+ T S   TSP
Sbjct: 502 SSIYLPQPAYPEVKPNSSVILSSTQSQNNTSP 533


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 270 VAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRSGN 380
           VAQ AG +A +SA   G+      ++N   D V S N
Sbjct: 779 VAQLAGAVAEISAYHHGEQSLMGTIVNLAQDYVGSNN 815


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 270 VAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRSGN 380
           VAQ AG +A +SA   G+      ++N   D V S N
Sbjct: 779 VAQLAGAVAEISAYHHGEQSLMGTIVNLAQDYVGSNN 815


>Z46242-13|CAA86328.1|  135|Caenorhabditis elegans Hypothetical
           protein F35G12.9 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 127 CRVEFHYHCID*W 89
           CR  FH HCID W
Sbjct: 100 CRHAFHRHCIDKW 112


>U61947-2|AAB03135.1|  498|Caenorhabditis elegans Hypothetical
           protein C06G3.6 protein.
          Length = 498

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 109 NEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEIL 225
           +++ R +++ KA+    +AW  + DT+ +   L++QE+L
Sbjct: 116 DDLGRTVNECKATMKSDKAWRVMKDTEIAEGQLSLQELL 154


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
           protein F26A3.3 protein.
          Length = 1632

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 315 GYRQIDGR*FRRFGPPLMLDCIIALAGHVLQDLLNVEDG 199
           G R++D    R+F    +L+C+I+  G V++D + +++G
Sbjct: 382 GSREVDTNRERKFAITYLLECLIS-RGAVVKDQILLDEG 419


>Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical
           protein F36H1.3 protein.
          Length = 597

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 274 PKPPEL-SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPA 390
           P PP + SP  LP +P    +P+T          P +SPA
Sbjct: 503 PAPPAIPSPAKLPTAPPPVEKPVTPSPSASPLPSPVSSPA 542


>Z48716-3|CAA88599.1|   96|Caenorhabditis elegans Hypothetical
           protein F59B10.5 protein.
          Length = 96

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 253 AVKHQRWPKPPELSPIYLPVSPVMPVQP 336
           +V ++ +P P E++P Y+P+     V+P
Sbjct: 46  SVAYEDFPTPGEMTPKYVPIMDFAKVRP 73


>X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 238 SQGDYAVKHQRWPKPPELSPIYLP 309
           S  +YAV  +  P PP LSP  +P
Sbjct: 374 SNNEYAVIQKSTPPPPSLSPPSIP 397


>AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical
           protein C18B12.4 protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 142 LFHHQCRVEFHYHCID*WSPMVQRRRL 62
           L H  CR  FH +CID W  + Q R++
Sbjct: 260 LRHLPCRHVFHCNCIDVW--LTQTRKI 284


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
           polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 315 GYRQIDGR*FRRFGPPLMLDCIIALAGHVLQDLLNVEDG 199
           G R++D    R+F    +L+C+I+  G V++D + +++G
Sbjct: 382 GSREVDTNRERKFAITYLLECLIS-RGAVVKDQILLDEG 419


>AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein2 protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 238 SQGDYAVKHQRWPKPPELSPIYLP 309
           S  +YAV  +  P PP LSP  +P
Sbjct: 374 SNNEYAVIQKSTPPPPSLSPPSIP 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.131    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,155,549
Number of Sequences: 27780
Number of extensions: 185740
Number of successful extensions: 649
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)